Variant report
| Variant | esv3336554 |
|---|---|
| Chromosome Location | chrX:91606711-91607926 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs184320756 | chrX:91606786-91606787 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs145531649 | chrX:91606796-91606797 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs12843471 | chrX:91606878-91606879 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs141714735 | chrX:91607113-91607114 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs540161486 | chrX:91607124-91607125 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs6618980 | chrX:91607214-91607215 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs75224703 | chrX:91607258-91607259 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs188621649 | chrX:91607292-91607293 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs149386232 | chrX:91607317-91607318 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs180949408 | chrX:91607464-91607465 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs185944278 | chrX:91607499-91607500 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs191993131 | chrX:91607564-91607565 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs147487331 | chrX:91607810-91607811 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs201790682 | chrX:91607845-91607846 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs182195791 | chrX:91607908-91607909 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:39)
| Disease | PMID | Source |
|---|---|---|
| Neuroblastoma | 18923191 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Schizophrenia | 23904455 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| infertile | 22614455 | CNVD |
| Autism | 22495311 | CNVD |
| Cancer | 20581869 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| primary effusion lymphomas | 17116491 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Seminomas | 18059402 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Cancer | 22429812 | CNVD |
| Cancer | 16751803 | CNVD |
| Astrocytoma | 22246337 | CNVD |
| Mental retardation | 17339581 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Mental retardation | 20877625 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:91605400-91608200 | Enhancers | Hela-S3 | cervix |
