Variant report

Variant	rs6618980
Chromosome Location	chrX:91607214-91607215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1986011	0.85[JPT][hapmap]
rs2522664	1.00[CEU][hapmap]
rs2573785	0.91[CEU][hapmap]
rs2574054	0.93[CHD][hapmap];0.92[JPT][hapmap]
rs2755052	0.91[CEU][hapmap];0.90[TSI][hapmap]
rs4893316	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5942214	0.85[JPT][hapmap]
rs5984175	0.84[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs6618972	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1001030	chrX:91539006-92375367	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv15966	chrX:91540570-92371792	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3331065	chrX:91605883-91607414	Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3336554	chrX:91606711-91607926	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91605400-91608200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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