Variant report

Variant	rs2574054
Chromosome Location	chrX:91579524-91579525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1986011	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs2905671	0.85[CEU][hapmap];0.81[GIH][hapmap];0.85[TSI][hapmap]
rs4893316	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs5942214	1.00[CEU][hapmap]
rs5984175	0.93[CHD][hapmap];0.91[JPT][hapmap]
rs6618972	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs6618980	0.93[CHD][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432350	chrX:91158935-91590765	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv532885	chrX:91428554-92377178	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1001030	chrX:91539006-92375367	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv15966	chrX:91540570-92371792	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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