Variant report
Variant | esv3342358 |
---|---|
Chromosome Location | chr14:84641048-84641320 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr14:84641252-84641319 | Medullo | brain: | n/a | n/a |
2 | SPI1 | chr14:84641012-84641332 | HL-60 | blood: | n/a | chr14:84641157-84641170 chr14:84641156-84641169 chr14:84641157-84641170 |
No data |
No data |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-497E19.2.1-9 | chr14:84640135-84641854 | NONHSAT038102 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000259012 | TF binding region |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs545602081 | chr14:84641076-84641077 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs187102211 | chr14:84641116-84641117 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs191156017 | chr14:84641119-84641120 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs182527900 | chr14:84641129-84641130 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs186740011 | chr14:84641155-84641156 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs190245372 | chr14:84641170-84641171 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs77741738 | chr14:84641171-84641172 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs145901204 | chr14:84641200-84641201 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs537829697 | chr14:84641214-84641215 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs1779550 | chr14:84641244-84641245 | Inactive region | TF binding regionlncRNA | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs138744628 | chr14:84641253-84641254 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs544808983 | chr14:84641285-84641286 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs553513434 | chr14:84641299-84641300 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs572025179 | chr14:84641303-84641304 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs542485755 | chr14:84641311-84641312 | Inactive region | TF binding regionlncRNA | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal cancer | 21851588 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 17899364 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Chronic myeloid leukemia | 20724749 | CNVD |
Wilms tumour | 21544195 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Breast cancer | 21858162 | CNVD |
Lung cancer | 18438408 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
cataract | 16735990 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 16608533 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Developmental delay | 21147756 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioblastoma | 21080181 | CNVD |
Breast cancer | 17133270 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Cancer | 20164920 | CNVD |
Breast cancer | 21364760 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |