Variant report

Variant	rs1779550
Chromosome Location	chr14:84641244-84641245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:84641012-84641332	HL-60	blood:	n/a	chr14:84641157-84641170 chr14:84641156-84641169 chr14:84641157-84641170

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-497E19.2.1-9	chr14:84640135-84641854	NONHSAT038102

Variant related genes	Relation type
ENSG00000259012	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10133349	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10140107	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10142571	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1031787	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11159633	0.94[EUR][1000 genomes]
rs11844860	0.94[EUR][1000 genomes]
rs12431743	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12878411	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12879881	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12881544	0.91[EUR][1000 genomes]
rs12881717	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1462339	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1466407	0.87[EUR][1000 genomes]
rs17119782	0.88[EUR][1000 genomes]
rs1779552	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2841157	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28637508	0.86[EUR][1000 genomes]
rs3001377	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6574776	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6574777	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7148526	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7157884	0.93[EUR][1000 genomes]
rs734656	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs744740	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7493899	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8004689	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8004742	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8004749	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs898939	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565376	chr14:84612088-84644822	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv976772	chr14:84639420-84641622	Inactive region	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv3342358	chr14:84641048-84641320	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links