Variant report
| Variant | rs17119782 |
|---|---|
| Chromosome Location | chr14:84668372-84668373 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10133349 | 0.91[EUR][1000 genomes] |
| rs10140107 | 0.85[EUR][1000 genomes] |
| rs10142571 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1031787 | 0.87[EUR][1000 genomes] |
| rs11159633 | 0.91[EUR][1000 genomes] |
| rs11844860 | 0.91[EUR][1000 genomes] |
| rs12431743 | 0.91[EUR][1000 genomes] |
| rs12878411 | 0.88[EUR][1000 genomes] |
| rs12879881 | 0.87[EUR][1000 genomes] |
| rs12881544 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12881717 | 0.92[EUR][1000 genomes] |
| rs1462339 | 0.87[EUR][1000 genomes] |
| rs1466407 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1779550 | 0.88[EUR][1000 genomes] |
| rs1779552 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2841157 | 0.88[EUR][1000 genomes] |
| rs28637508 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3001377 | 0.87[EUR][1000 genomes] |
| rs6574776 | 0.87[EUR][1000 genomes] |
| rs6574777 | 0.87[EUR][1000 genomes] |
| rs7148526 | 0.88[EUR][1000 genomes] |
| rs7157884 | 0.90[EUR][1000 genomes] |
| rs734656 | 0.92[EUR][1000 genomes] |
| rs744740 | 0.92[EUR][1000 genomes] |
| rs7493899 | 0.86[EUR][1000 genomes] |
| rs8004689 | 0.88[EUR][1000 genomes] |
| rs8004742 | 0.87[EUR][1000 genomes] |
| rs8004749 | 0.87[EUR][1000 genomes] |
| rs8012428 | 0.97[ASN][1000 genomes] |
| rs8015759 | 0.96[ASN][1000 genomes] |
| rs8021077 | 0.92[CEU][hapmap] |
| rs898939 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv85516 | chr14:84664110-84671508 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | n/a |
| 2 | nsv976854 | chr14:84667225-84675082 | Weak transcription Enhancers Flanking Active TSS | lncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84666400-84669600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr14:84667600-84668600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
