Variant report

Variant	nsv85516
Chromosome Location	chr14:84664110-84671508
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEL1L-9	chr14:84667417-84667612	XLOC_011091
2	lnc-SEL1L-9	chr14:84667416-84667612	NONHSAT038104

Extended variants
information (count: 204 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:204 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541926389	chr14:84666423-84666424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs139194863	chr14:84666455-84666456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs530963130	chr14:84666469-84666470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs552883338	chr14:84666472-84666473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs192871357	chr14:84666539-84666540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs528127524	chr14:84666613-84666614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185074907	chr14:84666650-84666651	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs371723229	chr14:84666704-84666705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs554502187	chr14:84666712-84666713	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs898939	chr14:84666749-84666750	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs573535063	chr14:84666755-84666756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs540179489	chr14:84666756-84666757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs558488534	chr14:84666787-84666788	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs117934052	chr14:84666804-84666805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs556739133	chr14:84666828-84666829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs569035762	chr14:84666829-84666830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs10400779	chr14:84666857-84666858	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs558071674	chr14:84666885-84666886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs572783283	chr14:84666886-84666887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs116336841	chr14:84666934-84666935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189450082	chr14:84666967-84666968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs574454060	chr14:84666994-84666995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs542314393	chr14:84667017-84667018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs563629527	chr14:84667021-84667022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs192354020	chr14:84667026-84667027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs546066817	chr14:84667091-84667092	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374671767	chr14:84667177-84667178	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs142584398	chr14:84667188-84667189	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs528818301	chr14:84667230-84667231	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs547279424	chr14:84667245-84667246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs183821969	chr14:84667258-84667259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs528835629	chr14:84667280-84667281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs744740	chr14:84667295-84667296	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs150504697	chr14:84667336-84667337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs5810174	chr14:84667371-84667372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs397709417	chr14:84667382-84667383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs78022046	chr14:84667383-84667384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs539650295	chr14:84667392-84667393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs557506490	chr14:84667454-84667455	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs566300780	chr14:84667461-84667462	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs533846724	chr14:84667466-84667467	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs188145255	chr14:84667493-84667494	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs181467340	chr14:84667502-84667503	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs541850735	chr14:84667518-84667519	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs112527383	chr14:84667557-84667558	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs370609705	chr14:84667576-84667577	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs150849424	chr14:84667581-84667582	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs545130957	chr14:84667585-84667586	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs201487618	chr14:84667609-84667610	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs186253664	chr14:84667620-84667621	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
Barrett''s syndrome	19417022	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
cataract	16735990	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16608533	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Breast cancer	17603634	CNVD
Glioblastoma	21080181	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	20164920	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84666400-84669600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84667000-84667600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:84667600-84668600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:84668400-84669000	Enhancers	Fetal Heart	heart
5	chr14:84668600-84669000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:84668800-84669200	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:84668800-84669600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:84669600-84673600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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