Variant report

Variant	nsv976854
Chromosome Location	chr14:84667225-84675082
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEL1L-9	chr14:84667417-84667612	XLOC_011091
2	lnc-SEL1L-9	chr14:84667416-84667612	NONHSAT038104

Extended variants
information (count: 307 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:307 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528818301	chr14:84667230-84667231	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs547279424	chr14:84667245-84667246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs183821969	chr14:84667258-84667259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs528835629	chr14:84667280-84667281	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs744740	chr14:84667295-84667296	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs150504697	chr14:84667336-84667337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs5810174	chr14:84667371-84667372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs397709417	chr14:84667382-84667383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs78022046	chr14:84667383-84667384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs539650295	chr14:84667392-84667393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557506490	chr14:84667454-84667455	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs566300780	chr14:84667461-84667462	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs533846724	chr14:84667466-84667467	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs188145255	chr14:84667493-84667494	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs181467340	chr14:84667502-84667503	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs541850735	chr14:84667518-84667519	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs112527383	chr14:84667557-84667558	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs370609705	chr14:84667576-84667577	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs150849424	chr14:84667581-84667582	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs545130957	chr14:84667585-84667586	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs201487618	chr14:84667609-84667610	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs186253664	chr14:84667620-84667621	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs573433789	chr14:84667635-84667636	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs190384866	chr14:84667672-84667673	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs35268033	chr14:84667745-84667746	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs562365998	chr14:84667760-84667761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs79446900	chr14:84667786-84667787	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs149672204	chr14:84667803-84667804	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs115241798	chr14:84667855-84667856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs181703588	chr14:84667876-84667877	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs528734049	chr14:84667897-84667898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs546984237	chr14:84667961-84667962	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs147947653	chr14:84667962-84667963	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs734656	chr14:84668023-84668024	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs141867348	chr14:84668031-84668032	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs533737586	chr14:84668084-84668085	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145503788	chr14:84668109-84668110	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs567433765	chr14:84668137-84668138	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs186450588	chr14:84668159-84668160	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs10130774	chr14:84668190-84668191	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs190912600	chr14:84668246-84668247	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs10143051	chr14:84668253-84668254	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs369163079	chr14:84668255-84668256	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs528734649	chr14:84668304-84668305	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs547221981	chr14:84668313-84668314	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs183097137	chr14:84668327-84668328	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs540820226	chr14:84668342-84668343	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs185143787	chr14:84668369-84668370	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs17119782	chr14:84668372-84668373	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs544860284	chr14:84668387-84668388	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
Barrett''s syndrome	19417022	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
cataract	16735990	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16608533	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Breast cancer	17603634	CNVD
Glioblastoma	21080181	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	20164920	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84666400-84669600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84667000-84667600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:84667600-84668600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:84668400-84669000	Enhancers	Fetal Heart	heart
5	chr14:84668600-84669000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:84668800-84669200	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:84668800-84669600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:84669600-84673600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:84673600-84674600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:84674600-84675000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:84675000-84676000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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