Variant report
Variant | rs1779552 |
---|---|
Chromosome Location | chr14:84643293-84643294 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-497E19.2.1-8 | chr14:84642763-84643432 | NONHSAT038103 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10133349 | 0.87[EUR][1000 genomes] |
rs10140107 | 0.80[EUR][1000 genomes] |
rs10142571 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1031787 | 0.82[EUR][1000 genomes] |
rs11159633 | 0.87[EUR][1000 genomes] |
rs11844860 | 0.87[EUR][1000 genomes] |
rs12431743 | 0.87[EUR][1000 genomes] |
rs12878411 | 0.83[EUR][1000 genomes] |
rs12879881 | 0.83[EUR][1000 genomes] |
rs12881544 | 0.92[EUR][1000 genomes] |
rs12881717 | 0.88[EUR][1000 genomes] |
rs1462339 | 0.82[EUR][1000 genomes] |
rs1466407 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs17119782 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1779550 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes] |
rs2841157 | 0.92[EUR][1000 genomes] |
rs28637508 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs3001377 | 0.83[EUR][1000 genomes] |
rs6574776 | 0.83[EUR][1000 genomes] |
rs6574777 | 0.83[EUR][1000 genomes] |
rs7148526 | 0.83[EUR][1000 genomes] |
rs7157884 | 0.86[EUR][1000 genomes] |
rs734656 | 0.88[EUR][1000 genomes] |
rs744740 | 0.88[EUR][1000 genomes] |
rs7493899 | 0.82[EUR][1000 genomes] |
rs8004689 | 0.83[EUR][1000 genomes] |
rs8004742 | 0.83[EUR][1000 genomes] |
rs8004749 | 0.83[EUR][1000 genomes] |
rs8021077 | 0.89[CEU][hapmap] |
rs898939 | 0.88[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv565376 | chr14:84612088-84644822 | Enhancers Weak transcription | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv983846 | chr14:84641622-84643399 | Inactive region | lncRNA | n/a | inside rSNPs | n/a |
No data |