Variant report

Variant	nsv976772
Chromosome Location	chr14:84639420-84641622
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:84641252-84641319	Medullo	brain:	n/a	n/a
2	POLR2A	chr14:84639674-84639727	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr14:84639731-84639839	MCF10A-Er-Src	breast:	n/a	n/a
4	SPI1	chr14:84641012-84641332	HL-60	blood:	n/a	chr14:84641157-84641170 chr14:84641156-84641169 chr14:84641157-84641170
5	USF2	chr14:84639707-84639798	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-497E19.2.1-10	chr14:84639185-84639950	NONHSAT038101
2	lnc-RP11-497E19.2.1-9	chr14:84640135-84641854	NONHSAT038102

Variant related genes	Relation type
ENSG00000258923	TF binding region
ENSG00000259012	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:78 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534679507	chr14:84639457-84639458	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs1676063	chr14:84639480-84639481	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs77199467	chr14:84639488-84639489	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs150408842	chr14:84639580-84639581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs370645795	chr14:84639605-84639606	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs557227265	chr14:84639609-84639610	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs75350938	chr14:84639617-84639618	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs531963122	chr14:84639636-84639637	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs539710926	chr14:84639651-84639652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs145599883	chr14:84639751-84639752	Inactive region	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs12323471	chr14:84639822-84639823	Inactive region	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs569052403	chr14:84639826-84639827	Inactive region	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs3001399	chr14:84639831-84639832	Inactive region	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs536495701	chr14:84639940-84639941	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs79370976	chr14:84640169-84640170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs61984723	chr14:84640183-84640184	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs544403278	chr14:84640186-84640187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs562506741	chr14:84640209-84640210	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs566942642	chr14:84640218-84640219	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs376503774	chr14:84640283-84640284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs148905526	chr14:84640327-84640328	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551412792	chr14:84640349-84640350	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs143527374	chr14:84640378-84640379	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs558692105	chr14:84640393-84640394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs376643423	chr14:84640415-84640416	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs185903816	chr14:84640478-84640479	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs546588671	chr14:84640497-84640498	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs568221131	chr14:84640535-84640536	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs570558747	chr14:84640570-84640571	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs188802321	chr14:84640574-84640575	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs72629343	chr14:84640581-84640582	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs569324720	chr14:84640606-84640607	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs540007336	chr14:84640617-84640618	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs115407693	chr14:84640639-84640640	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs573574915	chr14:84640670-84640671	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs574437353	chr14:84640685-84640686	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs115841351	chr14:84640690-84640691	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs138159558	chr14:84640692-84640693	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs554195354	chr14:84640695-84640696	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs114483738	chr14:84640773-84640774	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs543943362	chr14:84640836-84640837	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs143517507	chr14:84640887-84640888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs369768588	chr14:84640888-84640889	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs577797541	chr14:84640903-84640904	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs545180763	chr14:84640913-84640914	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs560064856	chr14:84640933-84640934	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs527538756	chr14:84640935-84640936	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs74069609	chr14:84640943-84640944	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs572070617	chr14:84640965-84640966	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs561712712	chr14:84640985-84640986	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
Barrett''s syndrome	19417022	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
cataract	16735990	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16608533	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Breast cancer	17603634	CNVD
Glioblastoma	21080181	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	20164920	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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