Variant report
| Variant | rs72629343 |
|---|---|
| Chromosome Location | chr14:84640581-84640582 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-497E19.2.1-9 | chr14:84640135-84641854 | NONHSAT038102 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10145113 | 0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11159634 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11159635 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12590599 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12590626 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12590652 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12590669 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1676065 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1779579 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2045739 | 1.00[EUR][1000 genomes] |
| rs2045740 | 1.00[EUR][1000 genomes] |
| rs58632727 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs67304290 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7157123 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7157150 | 1.00[EUR][1000 genomes] |
| rs72629346 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72629347 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs72629348 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72629351 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv565376 | chr14:84612088-84644822 | Enhancers Weak transcription | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv976772 | chr14:84639420-84641622 | Inactive region | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
