Variant report
| Variant | rs72629351 |
|---|---|
| Chromosome Location | chr14:84700980-84700981 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10145113 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11159634 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11159635 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12590599 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12590626 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12590652 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12590669 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1676065 | 1.00[EUR][1000 genomes] |
| rs1779579 | 1.00[EUR][1000 genomes] |
| rs2045739 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2045740 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs58632727 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59321128 | 0.94[AFR][1000 genomes] |
| rs67304290 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7157123 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7157150 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72629343 | 1.00[EUR][1000 genomes] |
| rs72629346 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72629347 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72629348 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902160 | chr14:84694867-84730585 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv902161 | chr14:84699866-84769903 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84700800-84701400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
