Variant report
| Variant | rs2045740 |
|---|---|
| Chromosome Location | chr14:84690370-84690371 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:84688729..84690919-chr14:84690956..84693306,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10145113 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11159634 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11159635 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12590599 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12590626 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12590652 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12590669 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1676065 | 1.00[EUR][1000 genomes] |
| rs1779579 | 1.00[EUR][1000 genomes] |
| rs2045739 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs58632727 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs67304290 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7157123 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7157150 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72629343 | 1.00[EUR][1000 genomes] |
| rs72629346 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72629347 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72629348 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72629351 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3373447 | chr14:84689099-84691047 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84690200-84690800 | Enhancers | Rectal Smooth Muscle | rectum |
