Variant report

Variant	rs72629346
Chromosome Location	chr14:84668863-84668864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10145113	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11159634	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11159635	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590599	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590626	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590652	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590669	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1676065	1.00[EUR][1000 genomes]
rs1779579	1.00[EUR][1000 genomes]
rs2045739	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2045740	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58632727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67304290	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7157123	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157150	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72629347	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629348	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72629351	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv85516	chr14:84664110-84671508	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
2	nsv976854	chr14:84667225-84675082	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84666400-84669600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84668400-84669000	Enhancers	Fetal Heart	heart
3	chr14:84668600-84669000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:84668800-84669200	Enhancers	Rectal Smooth Muscle	rectum
5	chr14:84668800-84669600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links