Variant report

Variant	esv3345522
Chromosome Location	chr6:79786183-79788481
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:906)
CpG islands
(count:915)
Chromatin interactive
region (count:27)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:906 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:79786574-79787086	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:79787796-79789130	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:79785879-79787060	K562	blood:	n/a	chr6:79786434-79786450 chr6:79786435-79786451
4	ARID3A	chr6:79787980-79790015	K562	blood:	n/a	n/a
5	ATF1	chr6:79787882-79788609	K562	blood:	n/a	n/a
6	ATF2	chr6:79787781-79788183	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr6:79787761-79788749	GM12878	blood:	n/a	n/a
8	ATF2	chr6:79786619-79787074	GM12878	blood:	n/a	n/a
9	ATF2	chr6:79787696-79788797	GM12878	blood:	n/a	n/a
10	BACH1	chr6:79787848-79788777	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr6:79787886-79788612	K562	blood:	n/a	n/a
12	BACH1	chr6:79786788-79786970	H1-hESC	embryonic stem cell:	n/a	n/a
13	BATF	chr6:79788158-79788563	GM12878	blood:	n/a	n/a
14	BATF	chr6:79787841-79788097	GM12878	blood:	n/a	n/a
15	BCL11A	chr6:79788198-79788601	GM12878	blood:	n/a	n/a
16	BCL3	chr6:79787745-79788775	A549	lung:	n/a	chr6:79787820-79787833 chr6:79787985-79787994 chr6:79788000-79788009
17	BCLAF1	chr6:79786541-79787064	GM12878	blood:	n/a	chr6:79786962-79786975 chr6:79786817-79786830 chr6:79786823-79786832 chr6:79786820-79786833
18	BCLAF1	chr6:79787741-79788657	GM12878	blood:	n/a	chr6:79787820-79787833 chr6:79787985-79787994 chr6:79788000-79788009
19	BCLAF1	chr6:79787634-79788755	GM12878	blood:	n/a	chr6:79787820-79787833 chr6:79787985-79787994 chr6:79787725-79787738 chr6:79788000-79788009 chr6:79787721-79787734 chr6:79787716-79787729
20	BCLAF1	chr6:79786508-79786930	GM12878	blood:	n/a	chr6:79786817-79786830 chr6:79786823-79786832 chr6:79786820-79786833
21	BCLAF1	chr6:79787828-79788379	K562	blood:	n/a	chr6:79787985-79787994 chr6:79788000-79788009
22	BHLHE40	chr6:79786359-79787064	GM12878	blood:	n/a	chr6:79786965-79786981 chr6:79786818-79786834 chr6:79786817-79786833
23	BHLHE40	chr6:79786607-79786811	A549	lung:	n/a	n/a
24	BHLHE40	chr6:79787716-79788679	HepG2	liver:	n/a	chr6:79788334-79788350
25	BHLHE40	chr6:79787734-79788924	GM12878	blood:	n/a	chr6:79788334-79788350
26	BHLHE40	chr6:79786542-79787050	HepG2	liver:	n/a	chr6:79786965-79786981 chr6:79786818-79786834 chr6:79786817-79786833
27	BHLHE40	chr6:79787645-79788678	K562	blood:	n/a	chr6:79788334-79788350
28	BHLHE40	chr6:79786485-79787128	K562	blood:	n/a	chr6:79786965-79786981 chr6:79786818-79786834 chr6:79786817-79786833
29	BRCA1	chr6:79788115-79788256	H1-hESC	embryonic stem cell:	n/a	n/a
30	BRCA1	chr6:79786210-79787089	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr6:79787865-79788173	GM12878	blood:	n/a	n/a
32	BRCA1	chr6:79787776-79789002	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr6:79787864-79788025	HepG2	liver:	n/a	n/a
34	CBX3	chr6:79788111-79788652	K562	blood:	n/a	n/a
35	CBX3	chr6:79786506-79786932	K562	blood:	n/a	n/a
36	CCNT2	chr6:79786626-79787145	K562	blood:	n/a	n/a
37	CCNT2	chr6:79787385-79788583	K562	blood:	n/a	chr6:79788268-79788277
38	CEBPB	chr6:79786585-79786733	HepG2	liver:	n/a	n/a
39	CEBPB	chr6:79788165-79788809	MCF-7	breast:	n/a	n/a
40	CEBPB	chr6:79786487-79787054	Hela-S3	cervix:	n/a	n/a
41	CEBPB	chr6:79786532-79787027	HepG2	liver:	n/a	n/a
42	CEBPB	chr6:79788207-79788499	GM12878	blood:	n/a	n/a
43	CEBPB	chr6:79786559-79786842	K562	blood:	n/a	n/a
44	CEBPB	chr6:79786597-79786904	MCF-7	breast:	n/a	n/a
45	CEBPB	chr6:79786510-79787076	IMR90	lung:	n/a	n/a
46	CEBPB	chr6:79788146-79788852	A549	lung:	n/a	n/a
47	CEBPB	chr6:79788357-79788827	K562	blood:	n/a	n/a
48	CEBPB	chr6:79788423-79788832	ECC-1	luminal epithelium:	n/a	n/a
49	CEBPB	chr6:79788058-79789156	K562	blood:	n/a	n/a
50	CEBPB	chr6:79788159-79788828	ECC-1	luminal epithelium:	n/a	n/a

(count:915 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:79788061-79788111	NH-A	brain:	n/a
2	chr6:79787698-79787748	HNPCEpiC	eye:	n/a
3	chr6:79788061-79788111	H1-hESC	embryonic stem cell:	embryo
4	chr6:79788063-79788113	PrEC	prostate:	n/a
5	chr6:79786675-79786725	U87	brain:	n/a
6	chr6:79788446-79788496	GM19239	blood:	n/a
7	chr6:79788234-79788284	HEEpiC	esophagus:	n/a
8	chr6:79788336-79788386	HRE	kidney:	n/a
9	chr6:79786675-79786725	A549	lung:	n/a
10	chr6:79788076-79788126	BE2_C	brain:	n/a
11	chr6:79788107-79788157	LNCaP	prostate:	n/a
12	chr6:79788069-79788119	HCM	heart:	n/a
13	chr6:79788061-79788111	AG04449	skin:	fetal
14	chr6:79786675-79786725	SK-N-SH_RA	brain:	n/a
15	chr6:79788063-79788113	ECC-1	luminal epithelium:	n/a
16	chr6:79786963-79787013	HMEC	breast:	n/a
17	chr6:79787561-79787611	Caco-2	colon:	n/a
18	chr6:79787561-79787611	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:79788234-79788284	GM12892	blood:	n/a
20	chr6:79786963-79787013	Caco-2	colon:	n/a
21	chr6:79788336-79788386	HMEC	breast:	n/a
22	chr6:79788076-79788126	SK-N-SH	brain:	n/a
23	chr6:79788061-79788111	PrEC	prostate:	n/a
24	chr6:79788481-79788531	HepG2	liver:	n/a
25	chr6:79788234-79788284	NH-A	brain:	n/a
26	chr6:79788099-79788149	U87	brain:	n/a
27	chr6:79788061-79788111	HRE	kidney:	n/a
28	chr6:79788107-79788157	ProgFib	skin:	n/a
29	chr6:79786675-79786725	HCF	heart:	n/a
30	chr6:79786675-79786725	SK-N-SH	brain:	n/a
31	chr6:79788446-79788496	RPTEC	kidney:	n/a
32	chr6:79786675-79786725	GM19239	blood:	n/a
33	chr6:79788069-79788119	K562	blood:	n/a
34	chr6:79786675-79786725	MCF-7	breast:	n/a
35	chr6:79788107-79788157	RPTEC	kidney:	n/a
36	chr6:79788107-79788157	AoSMC	blood vessel:	n/a
37	chr6:79788063-79788113	NHBE	bronchial:	n/a
38	chr6:79788069-79788119	HRPEpiC	eye:	n/a
39	chr6:79788061-79788111	NHBE	bronchial:	n/a
40	chr6:79788076-79788126	HepG2	liver:	n/a
41	chr6:79788099-79788149	HCF	heart:	n/a
42	chr6:79788234-79788284	T-47D	breast:	n/a
43	chr6:79786963-79787013	H1-hESC	embryonic stem cell:	embryo
44	chr6:79788069-79788119	GM12891	blood:	n/a
45	chr6:79788234-79788284	GM12891	blood:	n/a
46	chr6:79788063-79788113	AG04450	lung:	fetal
47	chr6:79788481-79788531	A549	lung:	n/a
48	chr6:79787561-79787611	GM12891	blood:	n/a
49	chr6:79788063-79788113	HL-60	blood:	n/a
50	chr6:79788336-79788386	K562	blood:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:79785619..79787325-chr6:86387294..86389226,2	K562	blood:
2	chr6:79762969..79765630-chr6:79788155..79789824,2	MCF-7	breast:
3	chr6:79786363..79788558-chr6:80246704..80249654,3	K562	blood:
4	chr20:46130306..46130939-chr6:79787773..79788663,2	MCF-7	breast:
5	chr6:79787878..79790499-chr6:79943656..79946271,3	K562	blood:
6	chr6:74229587..74231112-chr6:79786854..79788389,2	K562	blood:
7	chr1:150208197..150208796-chr6:79787867..79788515,2	NB4	blood:
8	chr6:79784764..79788097-chr6:80246158..80249987,4	MCF-7	breast:
9	chr1:182573142..182573673-chr6:79786233..79786866,2	HCT-116	colon:
10	chr17:75282048..75282959-chr6:79787830..79788632,2	Hela-S3	cervix:
11	chr20:45985175..45987796-chr6:79786476..79788420,2	MCF-7	breast:
12	chr6:79733598..79735343-chr6:79785922..79787786,2	MCF-7	breast:
13	chr19:47776842..47777558-chr6:79786410..79787079,2	Hela-S3	cervix:
14	chr3:155588737..155589548-chr6:79787120..79787910,2	Hela-S3	cervix:
15	chr17:76311415..76312298-chr6:79787801..79788634,2	Hela-S3	cervix:
16	chr6:79786974..79789353-chr6:80246033..80249654,3	K562	blood:
17	chr6:79785425..79789135-chr6:79942833..79950296,12	MCF-7	breast:
18	chr12:120554694..120555498-chr6:79787850..79788772,2	Hela-S3	cervix:
19	chr6:79782683..79789958-chr6:79939846..79945776,22	MCF-7	breast:
20	chr12:54674441..54675062-chr6:79787930..79788610,2	Hela-S3	cervix:
21	chr19:37018904..37019871-chr6:79788130..79789005,2	Hela-S3	cervix:
22	chr6:79577225..79578806-chr6:79784648..79786637,2	K562	blood:
23	chr15:66584739..66585732-chr6:79786578..79787569,2	Hela-S3	cervix:
24	chr6:79785468..79790645-chr6:79941426..79946271,8	K562	blood:
25	chr1:111505822..111506430-chr6:79787850..79788573,2	Hela-S3	cervix:
26	chr6:79575800..79578597-chr6:79786334..79789260,2	MCF-7	breast:
27	chr6:79785905..79787838-chr6:80041658..80044442,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IRAK1BP1-3	chr6:79787562-79790141	NONHSAT113677

No data

Variant related genes	Relation type
PHIP	TF binding region
PHIP	CpG island
ENSG00000261318	chromatin interactions
ENSG00000270362	chromatin interactions
ENSG00000273010	chromatin interactions
ENSG00000101040	chromatin interactions
ENSG00000124151	chromatin interactions
ENSG00000111737	chromatin interactions
ENSG00000143333	chromatin interactions
ENSG00000135338	chromatin interactions
ENSG00000118418	chromatin interactions
ENSG00000228629	chromatin interactions
ENSG00000166938	chromatin interactions
ENSG00000146243	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000135486	chromatin interactions
ENSG00000267737	chromatin interactions
ENSG00000254004	chromatin interactions
ENSG00000203875	chromatin interactions
ENSG00000143401	chromatin interactions
ENSG00000184640	chromatin interactions

Extended variants
information (count: 95 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:95 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532752333	chr6:79786190-79786191	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs553394912	chr6:79786191-79786192	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs75522484	chr6:79786211-79786212	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs578029646	chr6:79786230-79786231	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs569557158	chr6:79786245-79786246	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs538569184	chr6:79786259-79786260	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs548921520	chr6:79786263-79786264	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs140334864	chr6:79786269-79786270	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs186240613	chr6:79786304-79786305	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs369682175	chr6:79786305-79786306	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs190707235	chr6:79786317-79786318	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs370339176	chr6:79786328-79786329	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs373315580	chr6:79786334-79786335	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs182231991	chr6:79786387-79786388	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs144114413	chr6:79786412-79786413	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs376399423	chr6:79786449-79786450	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs34821012	chr6:79786476-79786477	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs116658053	chr6:79786478-79786479	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs544071800	chr6:79786530-79786531	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs201008418	chr6:79786636-79786637	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
21	rs74839403	chr6:79786639-79786640	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
22	rs3812161	chr6:79786645-79786646	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs543726518	chr6:79786670-79786671	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
24	rs186562330	chr6:79786683-79786684	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
25	rs552784818	chr6:79786746-79786747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
26	rs372463578	chr6:79786750-79786751	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
27	rs577385963	chr6:79786751-79786752	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
28	rs563044459	chr6:79786756-79786757	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
29	rs531958691	chr6:79786761-79786762	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
30	rs548559905	chr6:79786771-79786772	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
31	rs568740167	chr6:79786787-79786788	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs533937282	chr6:79786791-79786792	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs76371902	chr6:79786808-79786809	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs570839804	chr6:79786842-79786843	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs375721336	chr6:79786899-79786900	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs539571533	chr6:79786903-79786904	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs563503651	chr6:79786935-79786936	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs575058501	chr6:79786961-79786962	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs372741754	chr6:79786982-79786983	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
40	rs191299191	chr6:79786994-79786995	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
41	rs574719176	chr6:79786996-79786997	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
42	rs200221812	chr6:79787072-79787073	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
43	rs183216107	chr6:79787091-79787092	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
44	rs143577194	chr6:79787224-79787225	Active TSS Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
45	rs376702286	chr6:79787232-79787233	Active TSS Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
46	rs576936950	chr6:79787241-79787242	Active TSS Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs545880911	chr6:79787267-79787268	Active TSS Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs562581179	chr6:79787554-79787555	Active TSS Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
49	rs531894324	chr6:79787651-79787652	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
50	rs542455674	chr6:79787653-79787654	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:209 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
3	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:79760600-79786800	Weak transcription	Spleen	Spleen
5	chr6:79768600-79786400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:79770400-79786600	Weak transcription	Lung	lung
7	chr6:79775200-79786600	Weak transcription	Pancreas	Pancrea
8	chr6:79775400-79786600	Weak transcription	Gastric	stomach
9	chr6:79782600-79786200	Weak transcription	Placenta	Placenta
10	chr6:79783800-79790600	Active TSS	K562	blood
11	chr6:79784000-79789000	Active TSS	NHLF	lung
12	chr6:79784000-79789800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:79784000-79789800	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:79784200-79786200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:79784400-79789400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:79784400-79789600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:79784600-79789800	Active TSS	Fetal Brain Female	brain
18	chr6:79784800-79786200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr6:79784800-79789400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:79784800-79789600	Active TSS	H1 Cell Line	embryonic stem cell
21	chr6:79785000-79786200	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr6:79785000-79786200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:79785000-79786200	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr6:79785000-79786200	Flanking Active TSS	Fetal Lung	lung
25	chr6:79785000-79786400	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:79785000-79786600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:79785000-79786600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:79785000-79786600	Flanking Active TSS	NHEK	skin
29	chr6:79785000-79786800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:79785000-79787600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:79785000-79789200	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr6:79785000-79789200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:79785000-79789400	Active TSS	A549	lung
34	chr6:79785000-79789600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:79785000-79789800	Active TSS	Right Atrium	heart
36	chr6:79785200-79789200	Active TSS	HMEC	breast
37	chr6:79785200-79789400	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr6:79785200-79789600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:79785200-79789800	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr6:79785200-79790000	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr6:79785400-79786600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:79785400-79786800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr6:79785400-79789200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:79785400-79789200	Active TSS	Aorta	Aorta
45	chr6:79785400-79789600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:79785400-79789600	Active TSS	Psoas Muscle	Psoas
47	chr6:79785400-79789800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:79785400-79789800	Active TSS	Right Ventricle	heart
49	chr6:79785400-79789800	Active TSS	Thymus	Thymus
50	chr6:79785600-79786200	Flanking Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links