Variant report

Variant	rs542455674
Chromosome Location	chr6:79787653-79787654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:79786974..79789353-chr6:80246033..80249654,3	K562	blood:
2	chr6:74229587..74231112-chr6:79786854..79788389,2	K562	blood:
3	chr6:79786363..79788558-chr6:80246704..80249654,3	K562	blood:
4	chr6:79785905..79787838-chr6:80041658..80044442,2	MCF-7	breast:
5	chr6:79782683..79789958-chr6:79939846..79945776,22	MCF-7	breast:
6	chr6:79733598..79735343-chr6:79785922..79787786,2	MCF-7	breast:
7	chr20:45985175..45987796-chr6:79786476..79788420,2	MCF-7	breast:
8	chr6:79785425..79789135-chr6:79942833..79950296,12	MCF-7	breast:
9	chr3:155588737..155589548-chr6:79787120..79787910,2	Hela-S3	cervix:
10	chr6:79785468..79790645-chr6:79941426..79946271,8	K562	blood:
11	chr6:79575800..79578597-chr6:79786334..79789260,2	MCF-7	breast:
12	chr6:79784764..79788097-chr6:80246158..80249987,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IRAK1BP1-3	chr6:79787562-79790141	NONHSAT113677

No data

Variant related genes	Relation type
ENSG00000101040	Chromatin interaction
ENSG00000270362	Chromatin interaction
ENSG00000146243	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000135338	Chromatin interaction
ENSG00000118418	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3345522	chr6:79786183-79788481	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv3407655	chr6:79786258-79789006	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79783800-79790600	Active TSS	K562	blood
2	chr6:79784000-79789000	Active TSS	NHLF	lung
3	chr6:79784000-79789800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:79784000-79789800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:79784400-79789400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:79784400-79789600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:79784600-79789800	Active TSS	Fetal Brain Female	brain
8	chr6:79784800-79789400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:79784800-79789600	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:79785000-79789200	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr6:79785000-79789200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:79785000-79789400	Active TSS	A549	lung
13	chr6:79785000-79789600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:79785000-79789800	Active TSS	Right Atrium	heart
15	chr6:79785200-79789200	Active TSS	HMEC	breast
16	chr6:79785200-79789400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:79785200-79789600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:79785200-79789800	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr6:79785200-79790000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr6:79785400-79789200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:79785400-79789200	Active TSS	Aorta	Aorta
22	chr6:79785400-79789600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:79785400-79789600	Active TSS	Psoas Muscle	Psoas
24	chr6:79785400-79789800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:79785400-79789800	Active TSS	Right Ventricle	heart
26	chr6:79785400-79789800	Active TSS	Thymus	Thymus
27	chr6:79785600-79787800	Weak transcription	Stomach Mucosa	stomach
28	chr6:79785600-79788800	Active TSS	Rectal Smooth Muscle	rectum
29	chr6:79785600-79789000	Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr6:79785600-79789000	Active TSS	HSMM	muscle
31	chr6:79785600-79789000	Active TSS	HSMMtube	muscle
32	chr6:79785600-79789200	Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:79785600-79789200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:79785600-79789200	Active TSS	Colonic Mucosa	Colon
35	chr6:79785600-79789200	Active TSS	Fetal Intestine Large	intestine
36	chr6:79785600-79789200	Active TSS	Stomach Smooth Muscle	stomach
37	chr6:79785600-79789400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:79785600-79789400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:79785600-79789400	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr6:79785600-79789400	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr6:79785600-79789400	Active TSS	Fetal Stomach	stomach
42	chr6:79785600-79789400	Active TSS	GM12878-XiMat	blood
43	chr6:79785600-79789400	Active TSS	Hela-S3	cervix
44	chr6:79785600-79789600	Active TSS	Fetal Thymus	thymus
45	chr6:79785600-79789600	Active TSS	NHDF-Ad	bronchial
46	chr6:79785800-79789000	Active TSS	Fetal Kidney	kidney
47	chr6:79785800-79789000	Active TSS	NH-A	brain
48	chr6:79785800-79789200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:79785800-79789200	Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr6:79785800-79789200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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