Variant report

Variant	esv3350826
Chromosome Location	chr17:16019765-16020000
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16018918..16021715-chr17:16028326..16030856,2	K562	blood:
2	chr17:16019669..16022129-chr17:16022606..16024865,2	K562	blood:
3	chr17:16019956..16022065-chr17:16032573..16034409,2	K562	blood:
4	chr17:16019117..16021633-chr17:16117621..16119392,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141027	chromatin interactions

Extended variants
information (count: 10 )
Associated
traits (count: 161 )

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541876570	chr17:16019765-16019766	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs562366319	chr17:16019784-16019785	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs531277473	chr17:16019813-16019814	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs551000223	chr17:16019938-16019939	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs564658835	chr17:16019946-16019947	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs543283355	chr17:16019951-16019952	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs7207901	chr17:16019958-16019959	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs181566027	chr17:16019977-16019978	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs9909697	chr17:16019978-16019979	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs112223421	chr17:16019989-16019990	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:161)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Multiple myeloma	17550852	CNVD
Colorectal cancer	16774939	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Breast cancer	17603634	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
ovarian endometriomas	16273235	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22102821	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Smith-Magenis syndrome	18923513	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22492990	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	18414209	CNVD
Developmental delay	21549014	CNVD
Epilepsy	20970697	CNVD
Mental retardation	18414209	CNVD
Mental retardation	21549014	CNVD
Smith-Magenis syndrome	21981782	CNVD
Smith-Magenis syndrome	20188345	CNVD
Smith-Magenis syndrome	16775514	CNVD
Smith-Magenis syndrome	22585170	CNVD
Smith-Magenis syndrome	22241247	CNVD
Autism	20970697	CNVD
Mental retardation	19951919	CNVD
Potocki-Lupski syndrome	21271655	CNVD
Potocki-lupski syndrome	17357070	CNVD
Potocki-lupski syndrome	20110824	CNVD
Potocki-lupski syndrome	18923514	CNVD
Potocki-lupski syndrome	22241247	CNVD
Potocki-lupski syndrome	20188345	CNVD
Schizophrenia	21399695	CNVD
Mental retardation	16773131	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Charcot-marie-tooth disease	22470819	CNVD
Neurofibromatosis	22470819	CNVD
Neuropathy	22470819	CNVD
Smith-Magenis syndrome	18301319	CNVD
Smith-Magenis syndrome	17357070	CNVD
Smith-Magenis syndrome	18469339	CNVD
Smith-Magenis syndrome	22241097	CNVD
Smith-Magenis syndrome	22470819	CNVD
Tourette syndrome	18923514	CNVD
Type 1 diabetes	22470819	CNVD
Potocki-lupski syndrome	18469339	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
early-passage human iPS cells	21368824	CNVD
Neuropathy	17597781	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	17015230	CNVD
Smith-Magenis syndrome	17597781	CNVD
Potocki-lupski syndrome	18059269	CNVD
Potocki-lupski syndrome	17597781	CNVD
Mental retardation	17847001	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	20409316	CNVD

Chromatin state (count:135 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15995400-16021400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:15999400-16052400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:15999800-16047600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:16005000-16038600	Weak transcription	Stomach Mucosa	stomach
5	chr17:16006600-16064200	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr17:16011000-16022200	Weak transcription	Colon Smooth Muscle	Colon
7	chr17:16014400-16029800	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr17:16014600-16028600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr17:16015400-16030400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr17:16015400-16031800	Strong transcription	Fetal Intestine Large	intestine
11	chr17:16015600-16077600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr17:16015800-16024600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr17:16015800-16029600	Strong transcription	Fetal Thymus	thymus
14	chr17:16015800-16064400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr17:16016000-16026600	Strong transcription	Fetal Muscle Trunk	muscle
16	chr17:16016400-16022200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr17:16016400-16029800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr17:16016400-16064200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:16016600-16020800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:16016600-16024400	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr17:16016800-16025200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:16016800-16048800	Strong transcription	Adipose Nuclei	Adipose
23	chr17:16017000-16019800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr17:16017000-16039600	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr17:16017200-16025800	Strong transcription	Fetal Kidney	kidney
26	chr17:16017200-16030400	Strong transcription	Osteobl	bone
27	chr17:16017200-16064200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr17:16017400-16020400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr17:16017400-16021600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr17:16017400-16022400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr17:16017400-16023200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:16017400-16024600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr17:16017400-16025000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr17:16017600-16020000	Strong transcription	Brain Substantia Nigra	brain
35	chr17:16017600-16020200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr17:16017600-16020200	Strong transcription	Colonic Mucosa	Colon
37	chr17:16017600-16020400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr17:16017600-16020400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr17:16017600-16020800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
40	chr17:16017600-16021400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr17:16017600-16022400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
42	chr17:16017600-16024600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr17:16017600-16026400	Strong transcription	Left Ventricle	heart
44	chr17:16017600-16028000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr17:16017600-16036000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr17:16017800-16019800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
47	chr17:16017800-16019800	ZNF genes & repeats	Fetal Lung	lung
48	chr17:16017800-16019800	Weak transcription	Hela-S3	cervix
49	chr17:16017800-16020000	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr17:16017800-16020200	Strong transcription	Placenta Amnion	Placenta Amnion

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