Variant report

Variant	esv3352501
Chromosome Location	chr13:89281000-89308572
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-8	chr13:89282351-89282651	ENSG00000261666.1

Extended variants
information (count: 85 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:85 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73584456	chr13:89281027-89281028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs533958965	chr13:89281037-89281038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs552189368	chr13:89281057-89281058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs68118625	chr13:89281064-89281065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1326423	chr13:89281086-89281087	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs543561898	chr13:89281097-89281098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs1326422	chr13:89281164-89281165	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs575360144	chr13:89281187-89281188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs75497614	chr13:89281193-89281194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs555020974	chr13:89281203-89281204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs140818313	chr13:89281212-89281213	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs540781880	chr13:89281226-89281227	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs192924022	chr13:89281329-89281330	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs1952188	chr13:89281344-89281345	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs1326421	chr13:89281370-89281371	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs560028733	chr13:89282354-89282355	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs376956897	chr13:89282396-89282397	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs565975806	chr13:89282408-89282409	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs17546413	chr13:89282426-89282427	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs377759170	chr13:89282463-89282464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs563922215	chr13:89282465-89282466	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs558092043	chr13:89282483-89282484	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs531367948	chr13:89282531-89282532	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs180970572	chr13:89282533-89282534	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs138640056	chr13:89282593-89282594	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs374182241	chr13:89282637-89282638	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs571554224	chr13:89282640-89282641	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs184998471	chr13:89282651-89282652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs186093333	chr13:89301414-89301415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs190417053	chr13:89301436-89301437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs561031786	chr13:89301445-89301446	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs72640048	chr13:89301497-89301498	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs66559716	chr13:89301536-89301537	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs377311732	chr13:89301543-89301544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs553367401	chr13:89301586-89301587	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs566076751	chr13:89301608-89301609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs539443599	chr13:89301637-89301638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs573526187	chr13:89301641-89301642	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs1887113	chr13:89301645-89301646	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs569795386	chr13:89301654-89301655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs78031830	chr13:89301660-89301661	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs77172219	chr13:89301669-89301670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs74861088	chr13:89301681-89301682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs9521631	chr13:89301717-89301718	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs577769558	chr13:89301743-89301744	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs553381624	chr13:89301772-89301773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs577613015	chr13:89301797-89301798	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs544998619	chr13:89301806-89301807	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs76432515	chr13:89301810-89301811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs377020000	chr13:89301823-89301824	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Non-small cell lung cancer	16651412	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89280200-89281200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr13:89281200-89281400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
3	chr13:89301400-89301600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:89301600-89302400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:89302200-89302400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:89307800-89308000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links