Variant report
| Variant | rs72640048 |
|---|---|
| Chromosome Location | chr13:89301497-89301498 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1326440 | 1.00[ASN][1000 genomes] |
| rs1326441 | 1.00[ASN][1000 genomes] |
| rs1359656 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1409458 | 1.00[ASN][1000 genomes] |
| rs1415172 | 1.00[ASN][1000 genomes] |
| rs17546413 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17628718 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1952188 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2808807 | 1.00[ASN][1000 genomes] |
| rs2808808 | 1.00[ASN][1000 genomes] |
| rs4144008 | 1.00[ASN][1000 genomes] |
| rs72638594 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72640007 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72640009 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72640095 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72640098 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72641203 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72641204 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72641205 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72641211 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7323097 | 1.00[ASN][1000 genomes] |
| rs7326906 | 1.00[ASN][1000 genomes] |
| rs9301495 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051177 | chr13:89219432-89359036 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900816 | chr13:89224649-89392881 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1051359 | chr13:89258679-89311805 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3352501 | chr13:89281000-89308572 | Enhancers ZNF genes & repeats Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1043206 | chr13:89296779-89417347 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:89301400-89301600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
