Variant report
Variant | rs1359656 |
---|---|
Chromosome Location | chr13:89277251-89277252 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1326440 | 1.00[ASN][1000 genomes] |
rs1326441 | 1.00[ASN][1000 genomes] |
rs1409458 | 1.00[ASN][1000 genomes] |
rs1415172 | 1.00[ASN][1000 genomes] |
rs17546413 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17628718 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1952188 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4144008 | 1.00[ASN][1000 genomes] |
rs72638594 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72640007 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72640009 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72640048 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72640095 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72640098 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72641203 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72641204 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72641205 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72641211 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7323097 | 1.00[ASN][1000 genomes] |
rs7326906 | 1.00[ASN][1000 genomes] |
rs9301495 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv870345 | chr13:89164439-89295782 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv1051177 | chr13:89219432-89359036 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv900816 | chr13:89224649-89392881 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1051359 | chr13:89258679-89311805 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:89275600-89278600 | Weak transcription | NHEK | skin |
2 | chr13:89277200-89277400 | Enhancers | Primary T helper cells PMA-I stimulated | -- |