Variant report

Variant	rs7326906
Chromosome Location	chr13:89370165-89370166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:89369839..89371609-chr13:89377639..89379655,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1326435	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1326440	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326441	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336938	1.00[ASN][1000 genomes]
rs1336940	1.00[ASN][1000 genomes]
rs1359656	1.00[ASN][1000 genomes]
rs1409458	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415172	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575888	0.80[AMR][1000 genomes]
rs17546413	1.00[ASN][1000 genomes]
rs17628718	1.00[ASN][1000 genomes]
rs1889998	1.00[ASN][1000 genomes]
rs1952188	1.00[ASN][1000 genomes]
rs2808807	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2808808	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144008	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638594	1.00[ASN][1000 genomes]
rs72640007	1.00[ASN][1000 genomes]
rs72640009	1.00[ASN][1000 genomes]
rs72640048	1.00[ASN][1000 genomes]
rs72640095	1.00[ASN][1000 genomes]
rs72640098	1.00[ASN][1000 genomes]
rs72641203	1.00[ASN][1000 genomes]
rs72641204	1.00[ASN][1000 genomes]
rs72641205	1.00[ASN][1000 genomes]
rs72641211	1.00[ASN][1000 genomes]
rs7323097	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301495	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043206	chr13:89296779-89417347	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900817	chr13:89302824-89386602	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900818	chr13:89302824-89392881	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900819	chr13:89302824-89405660	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900820	chr13:89302824-89686507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv471167	chr13:89305650-89393187	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1037296	chr13:89355045-89461651	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1112	chr13:89364975-89417543	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89370000-89370400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links