Variant report

Variant	rs1889998
Chromosome Location	chr13:89572658-89572659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1001151	0.85[EUR][1000 genomes]
rs1326440	1.00[ASN][1000 genomes]
rs1326441	1.00[ASN][1000 genomes]
rs1336938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409458	1.00[ASN][1000 genomes]
rs1415172	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1757451	0.91[AMR][1000 genomes]
rs1819591	0.83[EUR][1000 genomes]
rs2050585	0.85[EUR][1000 genomes]
rs2807218	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2808807	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2808808	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3930555	0.85[EUR][1000 genomes]
rs4144008	1.00[ASN][1000 genomes]
rs6492398	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72641211	1.00[ASN][1000 genomes]
rs7323097	1.00[ASN][1000 genomes]
rs7326906	1.00[ASN][1000 genomes]
rs7338742	0.81[EUR][1000 genomes]
rs796184	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs796186	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9301495	1.00[ASN][1000 genomes]
rs9515492	0.85[EUR][1000 genomes]
rs9515501	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9522385	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900820	chr13:89302824-89686507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2758339	chr13:89411081-89875974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759957	chr13:89411081-89875974	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv900825	chr13:89463589-89574219	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv900826	chr13:89466123-89686507	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv900828	chr13:89474702-89642526	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv915623	chr13:89476229-89668705	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv900831	chr13:89477369-89610815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv826739	chr13:89477707-89830601	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv900835	chr13:89502819-89610815	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900839	chr13:89510330-89637081	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv34578	chr13:89515664-89822799	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv900840	chr13:89516104-89686507	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv900841	chr13:89523570-89622192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1043687	chr13:89523570-89673179	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv900842	chr13:89529847-89622192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2757546	chr13:89539415-89864593	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89571400-89573000	Enhancers	Primary B cells from peripheral blood	blood
2	chr13:89571600-89572800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:89571600-89573200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:89571800-89573000	Enhancers	Primary hematopoietic stem cells	blood
5	chr13:89571800-89573000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr13:89572000-89572800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:89572000-89572800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr13:89572000-89572800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr13:89572000-89573000	Enhancers	Primary T cells from cord blood	blood
10	chr13:89572400-89572800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr13:89572400-89574000	Enhancers	Dnd41	blood
12	chr13:89572600-89572800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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