Variant report

Variant	rs1757451
Chromosome Location	chr13:89766245-89766246
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1157962	1.00[ASN][1000 genomes]
rs1336938	0.91[AMR][1000 genomes]
rs1336940	0.91[AMR][1000 genomes]
rs1373729	1.00[ASN][1000 genomes]
rs1412089	1.00[ASN][1000 genomes]
rs1412090	1.00[ASN][1000 genomes]
rs170238	1.00[ASN][1000 genomes]
rs182608	1.00[ASN][1000 genomes]
rs1854904	1.00[ASN][1000 genomes]
rs186391	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1867556	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1889998	0.91[AMR][1000 genomes]
rs2120872	1.00[ASN][1000 genomes]
rs2166202	1.00[ASN][1000 genomes]
rs221317	1.00[ASN][1000 genomes]
rs314529	1.00[ASN][1000 genomes]
rs314540	1.00[ASN][1000 genomes]
rs314541	1.00[ASN][1000 genomes]
rs314542	1.00[ASN][1000 genomes]
rs314544	1.00[ASN][1000 genomes]
rs314553	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs314556	1.00[ASN][1000 genomes]
rs314557	1.00[ASN][1000 genomes]
rs314558	1.00[ASN][1000 genomes]
rs314559	1.00[ASN][1000 genomes]
rs314561	1.00[ASN][1000 genomes]
rs314567	1.00[ASN][1000 genomes]
rs314568	1.00[ASN][1000 genomes]
rs364362	1.00[ASN][1000 genomes]
rs367111	1.00[ASN][1000 genomes]
rs368814	1.00[ASN][1000 genomes]
rs392223	1.00[ASN][1000 genomes]
rs393327	1.00[ASN][1000 genomes]
rs393546	1.00[ASN][1000 genomes]
rs412365	1.00[ASN][1000 genomes]
rs415309	1.00[ASN][1000 genomes]
rs432539	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4773422	0.80[CEU][hapmap]
rs6492398	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7334436	1.00[ASN][1000 genomes]
rs796184	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796186	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301545	1.00[ASN][1000 genomes]
rs9515501	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2758339	chr13:89411081-89875974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759957	chr13:89411081-89875974	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv826739	chr13:89477707-89830601	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv34578	chr13:89515664-89822799	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757546	chr13:89539415-89864593	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv832674	chr13:89649146-89773584	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv821674	chr13:89712049-89780301	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv900844	chr13:89721607-89944833	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv900845	chr13:89758695-89864818	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89764800-89766800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:89765400-89766600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:89765400-89767200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:89765600-89767400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:89766000-89766400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:89766000-89766400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:89766000-89766400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:89766000-89766400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr13:89766000-89767000	Enhancers	HUES6 Cell Line	embryonic stem cell

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