Variant report

Variant	esv3359491
Chromosome Location	chr19:45023612-45027010
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:18)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44645187..44647445-chr19:45022726..45024251,2	MCF-7	breast:
2	chr19:45025124..45028007-chr19:45394431..45397224,2	MCF-7	breast:

(count:18 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
2	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
3	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
4	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
5	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
6	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
7	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
8	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
9	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
10	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
11	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
12	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
13	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
14	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
15	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
16	lnc-ZNF180-1	chr19:45024508-45024786	ENSG00000176395
17	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395
18	lnc-ZNF180-1	chr19:45026663-45026941	ENSG00000176395

No data

Variant related genes	Relation type
ENSG00000130204	chromatin interactions
ENSG00000263002	chromatin interactions

Extended variants
information (count: 128 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190377922	chr19:45023645-45023646	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs576290165	chr19:45023650-45023651	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs182725826	chr19:45023670-45023671	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs540189879	chr19:45023694-45023695	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs114360615	chr19:45023698-45023699	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs150080324	chr19:45023722-45023723	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs371386686	chr19:45023725-45023726	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs187413618	chr19:45023747-45023748	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs530703833	chr19:45023763-45023764	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs73042421	chr19:45023804-45023805	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs374542217	chr19:45023819-45023820	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs939902	chr19:45023839-45023840	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs115463874	chr19:45023862-45023863	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs546758124	chr19:45023873-45023874	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs191584063	chr19:45023895-45023896	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs535468686	chr19:45023908-45023909	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs529097914	chr19:45023912-45023913	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs549666551	chr19:45023931-45023932	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs375767318	chr19:45023951-45023952	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs569464429	chr19:45023957-45023958	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs183884889	chr19:45024027-45024028	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs370819685	chr19:45024059-45024060	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs138389394	chr19:45024138-45024139	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs140265732	chr19:45024147-45024148	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs199728111	chr19:45024231-45024232	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs373472518	chr19:45024514-45024515	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs575452187	chr19:45024518-45024519	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs544540077	chr19:45024528-45024529	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs200961907	chr19:45024535-45024536	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs61742432	chr19:45024537-45024538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs533196199	chr19:45024538-45024539	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs372834997	chr19:45024580-45024581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs12982449	chr19:45024581-45024582	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs370728134	chr19:45024582-45024583	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs548708709	chr19:45024592-45024593	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs199992941	chr19:45024615-45024616	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs200315176	chr19:45024662-45024663	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs377659033	chr19:45024668-45024669	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs569489595	chr19:45024677-45024678	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs371139859	chr19:45024681-45024682	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs538155382	chr19:45024704-45024705	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs115198078	chr19:45024706-45024707	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs571734560	chr19:45024719-45024720	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs377383877	chr19:45024722-45024723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs534153165	chr19:45024728-45024729	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs370523022	chr19:45024763-45024764	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs201619802	chr19:45024764-45024765	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs567439171	chr19:45024769-45024770	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs367917751	chr19:45024775-45024776	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs72528713	chr19:45025134-45025135	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Astrocytoma	22246337	CNVD
Ovarian cancer	22174824	CNVD
Cancer	20164920	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	20800559	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Spondylocostal dysostosis	21085971	CNVD
Nicotine metabolism	21956041	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	16750200	CNVD
Colorectal cancer	20459617	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45026400-45027000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links