Variant report

Variant	esv3359786
Chromosome Location	chr15:57611310-57613808
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:83)
CpG islands
(count:183)
Chromatin interactive
region (count:8)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:83 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr15:57612289-57612745	GM12878	blood:	n/a	n/a
2	BCL3	chr15:57612289-57612695	GM12878	blood:	n/a	n/a
3	BHLHE40	chr15:57612869-57613369	K562	blood:	n/a	n/a
4	BHLHE40	chr15:57613199-57613413	GM12878	blood:	n/a	n/a
5	CBX3	chr15:57613686-57614971	K562	blood:	n/a	n/a
6	CTCF	chr15:57612020-57612170	WERI-Rb-1	eye:	n/a	chr15:57612118-57612131
7	CTCF	chr15:57612412-57612580	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr15:57612452-57612538	MCF-7	breast:	n/a	n/a
9	CTCF	chr15:57612466-57612546	GM12891	blood:	n/a	n/a
10	CTCF	chr15:57612412-57612605	GM19239	blood:	n/a	n/a
11	CUX1	chr15:57613019-57613295	K562	blood:	n/a	n/a
12	E2F6	chr15:57613186-57613391	K562	blood:	n/a	n/a
13	E2F6	chr15:57613807-57614749	K562	blood:	n/a	n/a
14	E2F6	chr15:57613162-57613418	K562	blood:	n/a	n/a
15	EBF1	chr15:57613142-57613397	GM12878	blood:	n/a	n/a
16	EBF1	chr15:57613132-57613496	GM12878	blood:	n/a	n/a
17	EBF1	chr15:57613120-57613398	GM12878	blood:	n/a	n/a
18	ELF1	chr15:57612677-57613193	K562	blood:	n/a	n/a
19	ELK1	chr15:57612876-57613020	K562	blood:	n/a	n/a
20	EP300	chr15:57613792-57616968	K562	blood:	n/a	chr15:57614883-57614897
21	EP300	chr15:57612995-57613381	K562	blood:	n/a	chr15:57613096-57613105 chr15:57613178-57613187 chr15:57613284-57613298 chr15:57613246-57613260
22	EP300	chr15:57613279-57613314	K562	blood:	n/a	chr15:57613284-57613298
23	FOS	chr15:57613069-57613372	HUVEC	blood vessel:	n/a	chr15:57613178-57613187 chr15:57613176-57613187 chr15:57613178-57613185
24	FOXA2	chr15:57612867-57613203	A549	lung:	n/a	n/a
25	GATA2	chr15:57612986-57613367	HUVEC	blood vessel:	n/a	chr15:57613286-57613296
26	GTF2F1	chr15:57613285-57613338	K562	blood:	n/a	n/a
27	IRF1	chr15:57613044-57613656	K562	blood:	n/a	n/a
28	JUN	chr15:57612569-57613434	K562	blood:	n/a	chr15:57613178-57613187 chr15:57613178-57613185
29	JUND	chr15:57612950-57613383	K562	blood:	n/a	chr15:57613178-57613187 chr15:57613178-57613185
30	MAFF	chr15:57613138-57613188	K562	blood:	n/a	n/a
31	MAFK	chr15:57612949-57613332	K562	blood:	n/a	n/a
32	MAX	chr15:57613722-57614964	K562	blood:	n/a	chr15:57614404-57614415 chr15:57614405-57614415 chr15:57614405-57614415
33	MAX	chr15:57613729-57614877	NB4	blood:	n/a	chr15:57614404-57614415 chr15:57614405-57614415 chr15:57614405-57614415
34	MAX	chr15:57613683-57614021	K562	blood:	n/a	n/a
35	MAZ	chr15:57612840-57613362	K562	blood:	n/a	chr15:57613129-57613138
36	MYC	chr15:57613797-57614700	NB4	blood:	n/a	chr15:57614404-57614415 chr15:57614405-57614415 chr15:57614405-57614415
37	MYC	chr15:57613189-57613416	K562	blood:	n/a	n/a
38	MYC	chr15:57612378-57612628	MCF-7	breast:	n/a	n/a
39	MYC	chr15:57613739-57615048	K562	blood:	n/a	chr15:57614404-57614415 chr15:57614405-57614415 chr15:57614405-57614415
40	MYC	chr15:57612385-57612608	MCF-7	breast:	n/a	n/a
41	MYC	chr15:57613757-57614887	K562	blood:	n/a	chr15:57614404-57614415 chr15:57614405-57614415 chr15:57614405-57614415
42	MYC	chr15:57613729-57614915	K562	blood:	n/a	chr15:57614404-57614415 chr15:57614405-57614415 chr15:57614405-57614415
43	NFATC1	chr15:57612334-57612725	GM12878	blood:	n/a	n/a
44	NFATC1	chr15:57612254-57612658	GM12878	blood:	n/a	n/a
45	NR2F2	chr15:57612796-57613723	K562	blood:	n/a	n/a
46	PBX3	chr15:57612298-57612665	GM12878	blood:	n/a	n/a
47	POLR2A	chr15:57612876-57612957	K562	blood:	n/a	n/a
48	POLR2A	chr15:57613049-57613099	K562	blood:	n/a	n/a
49	POLR2A	chr15:57612443-57612454	A549	lung:	n/a	n/a
50	POLR2A	chr15:57612379-57612668	K562	blood:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:57611637-57611687	MCF10A-Er-Src	breast:	n/a
2	chr15:57611637-57611687	SKMC	muscle:	n/a
3	chr15:57611481-57611531	PFSK-1	brain:	n/a
4	chr15:57611586-57611636	AG09309	skin:	n/a
5	chr15:57611586-57611636	ECC-1	luminal epithelium:	n/a
6	chr15:57611586-57611636	RPTEC	kidney:	n/a
7	chr15:57611637-57611687	ECC-1	luminal epithelium:	n/a
8	chr15:57611637-57611687	HRCEpiC	kidney:	n/a
9	chr15:57611586-57611636	GM19239	blood:	n/a
10	chr15:57611637-57611687	SAEC	small airway:	n/a
11	chr15:57611586-57611636	PFSK-1	brain:	n/a
12	chr15:57611481-57611531	NB4	blood:	n/a
13	chr15:57611637-57611687	NH-A	brain:	n/a
14	chr15:57611637-57611687	HRE	kidney:	n/a
15	chr15:57611637-57611687	HNPCEpiC	eye:	n/a
16	chr15:57611481-57611531	HRE	kidney:	n/a
17	chr15:57611481-57611531	HEEpiC	esophagus:	n/a
18	chr15:57611586-57611636	AG04449	skin:	fetal
19	chr15:57611481-57611531	MCF-7	breast:	n/a
20	chr15:57611481-57611531	SKMC	muscle:	n/a
21	chr15:57611586-57611636	H1-hESC	embryonic stem cell:	embryo
22	chr15:57611637-57611687	NB4	blood:	n/a
23	chr15:57611637-57611687	AG04449	skin:	fetal
24	chr15:57611481-57611531	HCM	heart:	n/a
25	chr15:57611637-57611687	K562	blood:	n/a
26	chr15:57611586-57611636	GM12891	blood:	n/a
27	chr15:57611481-57611531	AG09319	gingival:	n/a
28	chr15:57611586-57611636	HIPEpiC	eye:	n/a
29	chr15:57611586-57611636	HPAEpiC	pulmonary alveolar:	n/a
30	chr15:57611637-57611687	H1-hESC	embryonic stem cell:	embryo
31	chr15:57611481-57611531	SK-N-MC	brain:	n/a
32	chr15:57611586-57611636	A549	lung:	n/a
33	chr15:57611586-57611636	HRE	kidney:	n/a
34	chr15:57611481-57611531	HIPEpiC	eye:	n/a
35	chr15:57611586-57611636	AG09319	gingival:	n/a
36	chr15:57611586-57611636	MCF10A-Er-Src	breast:	n/a
37	chr15:57611637-57611687	AoSMC	blood vessel:	n/a
38	chr15:57611637-57611687	IMR90	lung:	fetal
39	chr15:57611586-57611636	HL-60	blood:	n/a
40	chr15:57611481-57611531	PANC-1	pancreas:	n/a
41	chr15:57611637-57611687	AG09319	gingival:	n/a
42	chr15:57611637-57611687	AG04450	lung:	fetal
43	chr15:57611637-57611687	HAEpiC	amniotic membrane:	n/a
44	chr15:57611637-57611687	GM12878	blood:	n/a
45	chr15:57611637-57611687	AG10803	skin:	n/a
46	chr15:57611481-57611531	HAEpiC	amniotic membrane:	n/a
47	chr15:57611586-57611636	NT2-D1	testis:	n/a
48	chr15:57611586-57611636	ProgFib	skin:	n/a
49	chr15:57611586-57611636	HUVEC	blood vessel:	n/a
50	chr15:57611481-57611531	HPAEpiC	pulmonary alveolar:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:
2	chr15:57610844..57612856-chr15:57612872..57614940,2	K562	blood:
3	chr15:57574448..57575948-chr15:57613094..57616013,2	K562	blood:
4	chr15:57209252..57213677-chr15:57612967..57616292,5	K562	blood:
5	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
6	chr15:57592053..57595203-chr15:57613794..57616667,3	K562	blood:
7	chr15:57592002..57594571-chr15:57612516..57615928,4	K562	blood:
8	chr15:57022824..57025649-chr15:57612283..57614634,3	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF12-2	chr15:57612991-57613157	ENSG00000260172.1
2	lnc-TCF12-2	chr15:57611129-57611535	XLOC_011265
3	lnc-TCF12-2	chr15:57611283-57611654	NONHSAT044069
4	lnc-TCF12-2	chr15:57611336-57611654	ENSG00000260172.1

No data

Variant related genes	Relation type
ENSG00000260172	TF binding region
ENSG00000260172	CpG island
ENSG00000247982	chromatin interactions
ENSG00000140262	chromatin interactions
ENSG00000260172	chromatin interactions
ENSG00000137871	chromatin interactions

Extended variants
information (count: 128 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546555225	chr15:57611310-57611311	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
2	rs186444275	chr15:57611319-57611320	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
3	rs529167697	chr15:57611376-57611377	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs28548605	chr15:57611377-57611378	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs568716951	chr15:57611388-57611389	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs538044224	chr15:57611408-57611409	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs550826497	chr15:57611435-57611436	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs4774930	chr15:57611437-57611438	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs75117008	chr15:57611487-57611488	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs553417850	chr15:57611515-57611516	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs114832986	chr15:57611540-57611541	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs369895658	chr15:57611568-57611569	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs536158065	chr15:57611569-57611570	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs79442692	chr15:57611582-57611583	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs74606843	chr15:57611595-57611596	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs148149733	chr15:57611599-57611600	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs34234999	chr15:57611603-57611604	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs191891746	chr15:57611605-57611606	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs532988315	chr15:57611667-57611668	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs546266558	chr15:57611669-57611670	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs574830150	chr15:57611700-57611701	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs77389475	chr15:57611764-57611765	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs117109521	chr15:57611769-57611770	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs548915582	chr15:57611774-57611775	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs114331065	chr15:57611791-57611792	Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs531432207	chr15:57611837-57611838	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs369437601	chr15:57611879-57611880	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs2544134	chr15:57611912-57611913	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs183798907	chr15:57611930-57611931	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs539930337	chr15:57611934-57611935	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs547068716	chr15:57611971-57611972	Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs529003208	chr15:57612008-57612009	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs372881752	chr15:57612020-57612021	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs535840220	chr15:57612033-57612034	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs556130817	chr15:57612036-57612037	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs569512938	chr15:57612064-57612065	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs138927570	chr15:57612079-57612080	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs111821663	chr15:57612153-57612154	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs376453858	chr15:57612177-57612178	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs578082134	chr15:57612203-57612204	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs539944768	chr15:57612249-57612250	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs142364149	chr15:57612298-57612299	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs573345918	chr15:57612302-57612303	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs2248205	chr15:57612331-57612332	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs145925675	chr15:57612387-57612388	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs2591054	chr15:57612410-57612411	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs544932025	chr15:57612416-57612417	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs2591055	chr15:57612424-57612425	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs527490041	chr15:57612442-57612443	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs375955656	chr15:57612449-57612450	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Acute promyelocytic leukemia	19109227	CNVD

Chromatin state (count:148 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
4	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
5	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
6	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:57603200-57611400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:57604200-57612800	Weak transcription	Primary B cells from cord blood	blood
9	chr15:57605000-57619400	Weak transcription	Pancreas	Pancrea
10	chr15:57605600-57611800	Weak transcription	Fetal Stomach	stomach
11	chr15:57605600-57612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:57605600-57612400	Weak transcription	Fetal Brain Male	brain
13	chr15:57605600-57612800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:57605600-57614400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:57609400-57612400	Weak transcription	Right Atrium	heart
16	chr15:57611000-57611400	Enhancers	Primary B cells from peripheral blood	blood
17	chr15:57611000-57611600	ZNF genes & repeats	K562	blood
18	chr15:57611000-57612000	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr15:57611000-57613000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:57611200-57611400	Enhancers	Stomach Mucosa	stomach
21	chr15:57611200-57611600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:57611200-57612400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:57611200-57615000	Enhancers	Fetal Muscle Trunk	muscle
24	chr15:57611400-57611600	Enhancers	Stomach Smooth Muscle	stomach
25	chr15:57611400-57612000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:57611400-57612600	Weak transcription	Stomach Mucosa	stomach
27	chr15:57611400-57612800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:57611400-57616400	Enhancers	Fetal Muscle Leg	muscle
29	chr15:57611400-57620600	Enhancers	Fetal Intestine Small	intestine
30	chr15:57611600-57612000	Weak transcription	K562	blood
31	chr15:57611800-57613000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:57611800-57613000	Enhancers	Fetal Stomach	stomach
33	chr15:57611800-57613200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:57611800-57613200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr15:57612000-57612600	Enhancers	Colonic Mucosa	Colon
36	chr15:57612000-57613000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:57612000-57614000	Enhancers	K562	blood
38	chr15:57612000-57615800	Enhancers	Fetal Intestine Large	intestine
39	chr15:57612200-57613200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr15:57612400-57612600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:57612400-57612600	Enhancers	Fetal Brain Male	brain
42	chr15:57612400-57612800	Enhancers	Adipose Nuclei	Adipose
43	chr15:57612400-57612800	Enhancers	Fetal Heart	heart
44	chr15:57612400-57612800	Enhancers	Fetal Lung	lung
45	chr15:57612400-57613000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr15:57612400-57613000	Enhancers	Esophagus	oesophagus
47	chr15:57612400-57613000	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr15:57612400-57613000	Enhancers	Right Atrium	heart
49	chr15:57612400-57613200	Enhancers	Ovary	ovary
50	chr15:57612400-57613200	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links