Variant report

Variant	rs578082134
Chromosome Location	chr15:57612203-57612204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57596677..57601983-chr15:57611239..57618411,9	K562	blood:
2	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:

Variant related genes	Relation type
ENSG00000247982	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv3359786	chr15:57611310-57613808	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57599400-57612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:57599600-57612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:57599600-57612800	Weak transcription	GM12878-XiMat	blood
4	chr15:57599600-57614200	Weak transcription	Small Intestine	intestine
5	chr15:57599600-57617800	Weak transcription	Spleen	Spleen
6	chr15:57602800-57617000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:57604200-57612800	Weak transcription	Primary B cells from cord blood	blood
8	chr15:57605000-57619400	Weak transcription	Pancreas	Pancrea
9	chr15:57605600-57612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:57605600-57612400	Weak transcription	Fetal Brain Male	brain
11	chr15:57605600-57612800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:57605600-57614400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:57609400-57612400	Weak transcription	Right Atrium	heart
14	chr15:57611000-57613000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:57611200-57612400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:57611200-57615000	Enhancers	Fetal Muscle Trunk	muscle
17	chr15:57611400-57612600	Weak transcription	Stomach Mucosa	stomach
18	chr15:57611400-57612800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:57611400-57616400	Enhancers	Fetal Muscle Leg	muscle
20	chr15:57611400-57620600	Enhancers	Fetal Intestine Small	intestine
21	chr15:57611800-57613000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:57611800-57613000	Enhancers	Fetal Stomach	stomach
23	chr15:57611800-57613200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:57611800-57613200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr15:57612000-57612600	Enhancers	Colonic Mucosa	Colon
26	chr15:57612000-57613000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:57612000-57614000	Enhancers	K562	blood
28	chr15:57612000-57615800	Enhancers	Fetal Intestine Large	intestine
29	chr15:57612200-57613200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links