Variant report

Variant	esv3361968
Chromosome Location	chr15:52087428-52107237
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52089220..52092399-chr15:52092458..52095936,3	K562	blood:
2	chr15:52088548..52091371-chr15:52091695..52094863,3	K562	blood:
3	chr15:52100912..52103641-chr15:52104317..52106256,2	K562	blood:
4	chr15:52104389..52106808-chr15:52121747..52123928,3	MCF-7	breast:
5	chr15:52086963..52088898-chr15:52262138..52264722,2	MCF-7	breast:
6	chr15:52093956..52096389-chr15:52119846..52122671,2	MCF-7	breast:
7	chr15:52094295..52095871-chr15:52261900..52263731,2	MCF-7	breast:
8	chr15:52098625..52100284-chr15:52119574..52122353,2	MCF-7	breast:
9	chr15:52105390..52107839-chr15:52134954..52136621,2	K562	blood:
10	chr15:52087804..52093803-chr15:52117139..52123482,14	MCF-7	breast:
11	chr15:52093685..52094299-chr15:52180518..52181423,3	MCF-7	breast:
12	chr15:52088548..52091371-chr15:52091695..52094863,3	K562	blood:
13	chr15:52089329..52092071-chr15:52108088..52110534,3	MCF-7	breast:
14	chr15:52100222..52103696-chr15:52103888..52107125,3	MCF-7	breast:
15	chr15:52093233..52094257-chr15:52209501..52210343,4	MCF-7	breast:
16	chr15:52100222..52103696-chr15:52103888..52107125,3	MCF-7	breast:
17	chr15:52092315..52094838-chr15:52147516..52150199,2	MCF-7	breast:
18	chr15:52089712..52091955-chr15:52094446..52096730,3	MCF-7	breast:
19	chr15:52095961..52098733-chr15:52121375..52123490,2	MCF-7	breast:
20	chr15:52100912..52103641-chr15:52104317..52106256,2	K562	blood:
21	chr15:52098121..52099949-chr15:52102548..52104205,2	K562	blood:
22	chr15:52097000..52098593-chr15:52105503..52107331,2	K562	blood:
23	chr15:52077466..52080327-chr15:52092211..52093843,2	MCF-7	breast:
24	chr15:52103137..52106256-chr15:52118863..52123182,5	MCF-7	breast:
25	chr15:52093828..52094694-chr15:52121461..52122262,2	MCF-7	breast:
26	chr15:52100848..52103641-chr15:52104210..52107534,4	K562	blood:
27	chr15:52105030..52107341-chr15:52262781..52264487,2	MCF-7	breast:
28	chr15:52100848..52103641-chr15:52104210..52107534,4	K562	blood:
29	chr15:52089220..52092399-chr15:52092458..52095936,3	K562	blood:
30	chr15:52099817..52103659-chr15:52120631..52123209,5	MCF-7	breast:
31	chr15:52087845..52094257-chr15:52120068..52124048,9	MCF-7	breast:
32	chr15:52103958..52107915-chr15:52115684..52119713,4	MCF-7	breast:
33	chr15:52097471..52100058-chr15:52117119..52119729,2	MCF-7	breast:
34	chr15:52098121..52099949-chr15:52102548..52104205,2	K562	blood:
35	chr15:52093017..52094585-chr15:52106395..52107997,2	MCF-7	breast:
36	chr15:52091331..52093041-chr15:52113410..52115469,2	MCF-7	breast:
37	chr15:52106284..52108941-chr15:52129387..52131261,2	MCF-7	breast:
38	chr15:52093017..52094585-chr15:52106395..52107997,2	MCF-7	breast:
39	chr15:52097000..52098593-chr15:52105503..52107331,2	K562	blood:
40	chr15:52089712..52091955-chr15:52094446..52096730,3	MCF-7	breast:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	TMOD2	hsa-miR-34a-5p	chr15:52106077-52106083

Variant related genes	Relation type
ENSG00000166477	chromatin interactions
ENSG00000138594	chromatin interactions

Extended variants
information (count: 687 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:687 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147631015	chr15:52087447-52087448	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs11318605	chr15:52087466-52087467	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs572198890	chr15:52087483-52087484	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs536599573	chr15:52087509-52087510	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs554884496	chr15:52087534-52087535	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs576144041	chr15:52087553-52087554	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs557245384	chr15:52087571-52087572	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs57537539	chr15:52087626-52087627	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs75505689	chr15:52087628-52087629	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs199542034	chr15:52087639-52087640	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs397781292	chr15:52087641-52087642	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs543409997	chr15:52087663-52087664	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs115252444	chr15:52087672-52087673	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs576817231	chr15:52087750-52087751	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs144124016	chr15:52087761-52087762	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs201383981	chr15:52087763-52087764	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs557618274	chr15:52087766-52087767	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs690203	chr15:52087770-52087771	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs538390070	chr15:52087774-52087775	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs202116010	chr15:52087775-52087776	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs60510450	chr15:52087778-52087779	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs199677613	chr15:52087782-52087783	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs142684105	chr15:52087807-52087808	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs539825313	chr15:52087811-52087812	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs561211388	chr15:52087863-52087864	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs555372436	chr15:52087874-52087875	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs58313660	chr15:52087875-52087876	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs79812068	chr15:52087876-52087877	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs181769176	chr15:52087883-52087884	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs571720205	chr15:52087884-52087885	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs80341775	chr15:52087906-52087907	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs4775982	chr15:52087910-52087911	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs75651088	chr15:52087977-52087978	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs367646171	chr15:52087998-52087999	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs372185387	chr15:52088019-52088020	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs28696861	chr15:52088075-52088076	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs536437314	chr15:52088093-52088094	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs554920492	chr15:52088094-52088095	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs8041268	chr15:52088106-52088107	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs200833955	chr15:52088127-52088128	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs576377462	chr15:52088269-52088270	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs202030475	chr15:52088290-52088291	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs74015777	chr15:52088291-52088292	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs34716991	chr15:52088292-52088293	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs578000548	chr15:52088324-52088325	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs569456676	chr15:52088386-52088387	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs187379197	chr15:52088482-52088483	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs558226739	chr15:52088511-52088512	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs189448091	chr15:52088600-52088601	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs540796800	chr15:52088611-52088612	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:499 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
2	chr15:52052600-52106600	Weak transcription	HSMM	muscle
3	chr15:52053400-52090600	Weak transcription	Pancreas	Pancrea
4	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:52060600-52088400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:52060600-52091000	Weak transcription	Right Ventricle	heart
7	chr15:52060800-52101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:52060800-52102600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:52061600-52112000	Weak transcription	NHLF	lung
11	chr15:52061800-52098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:52064400-52090400	Weak transcription	Left Ventricle	heart
13	chr15:52065600-52090600	Weak transcription	Spleen	Spleen
14	chr15:52065800-52091000	Weak transcription	Esophagus	oesophagus
15	chr15:52067200-52090600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:52067600-52090600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:52067800-52089000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:52069200-52091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:52074000-52090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:52074000-52100000	Weak transcription	NHDF-Ad	bronchial
21	chr15:52074800-52102800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:52075000-52088600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:52075000-52090600	Weak transcription	Dnd41	blood
24	chr15:52075600-52089000	Weak transcription	Aorta	Aorta
25	chr15:52076400-52098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:52076600-52090400	Weak transcription	Primary B cells from cord blood	blood
27	chr15:52076600-52090400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:52076600-52090400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:52076600-52090400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:52076600-52090600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:52076600-52090600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:52076800-52090800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:52076800-52090800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:52076800-52104400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:52077000-52090400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:52077200-52098600	Weak transcription	Fetal Brain Male	brain
37	chr15:52079000-52098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:52079200-52089600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:52079200-52090600	Weak transcription	Fetal Thymus	thymus
40	chr15:52079200-52098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:52079400-52089000	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:52079400-52090600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:52079600-52088200	Weak transcription	Fetal Intestine Small	intestine
44	chr15:52079600-52090400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:52079800-52088600	Weak transcription	Thymus	Thymus
46	chr15:52080000-52089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:52080000-52090600	Weak transcription	Brain Anterior Caudate	brain
48	chr15:52080000-52090600	Weak transcription	Ovary	ovary
49	chr15:52080000-52099000	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:52080200-52089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links