Variant report

Variant	rs540796800
Chromosome Location	chr15:52088611-52088612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52088548..52091371-chr15:52091695..52094863,3	K562	blood:
2	chr15:52087845..52094257-chr15:52120068..52124048,9	MCF-7	breast:
3	chr15:52087804..52093803-chr15:52117139..52123482,14	MCF-7	breast:
4	chr15:52086963..52088898-chr15:52262138..52264722,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction
ENSG00000166477	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3361968	chr15:52087428-52107237	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
2	chr15:52052600-52106600	Weak transcription	HSMM	muscle
3	chr15:52053400-52090600	Weak transcription	Pancreas	Pancrea
4	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:52060600-52091000	Weak transcription	Right Ventricle	heart
6	chr15:52060800-52101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:52060800-52102600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:52061600-52112000	Weak transcription	NHLF	lung
10	chr15:52061800-52098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:52064400-52090400	Weak transcription	Left Ventricle	heart
12	chr15:52065600-52090600	Weak transcription	Spleen	Spleen
13	chr15:52065800-52091000	Weak transcription	Esophagus	oesophagus
14	chr15:52067200-52090600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:52067600-52090600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:52067800-52089000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:52069200-52091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:52074000-52090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:52074000-52100000	Weak transcription	NHDF-Ad	bronchial
20	chr15:52074800-52102800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:52075000-52090600	Weak transcription	Dnd41	blood
22	chr15:52075600-52089000	Weak transcription	Aorta	Aorta
23	chr15:52076400-52098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:52076600-52090400	Weak transcription	Primary B cells from cord blood	blood
25	chr15:52076600-52090400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:52076600-52090400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:52076600-52090400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:52076600-52090600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:52076600-52090600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:52076800-52090800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr15:52076800-52090800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:52076800-52104400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:52077000-52090400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:52077200-52098600	Weak transcription	Fetal Brain Male	brain
35	chr15:52079000-52098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:52079200-52089600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:52079200-52090600	Weak transcription	Fetal Thymus	thymus
38	chr15:52079200-52098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:52079400-52089000	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:52079400-52090600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:52079600-52090400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:52080000-52089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:52080000-52090600	Weak transcription	Brain Anterior Caudate	brain
44	chr15:52080000-52090600	Weak transcription	Ovary	ovary
45	chr15:52080000-52099000	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:52080200-52089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:52080200-52090400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:52080200-52090400	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:52080200-52090600	Weak transcription	Fetal Stomach	stomach
50	chr15:52080400-52089000	Weak transcription	Brain Inferior Temporal Lobe	brain

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