Variant report

Variant	esv3372336
Chromosome Location	chr6:143318059-143322357
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AIG1-7	chr6:143319249-143319476	NONHSAT115330
2	lnc-AIG1-7	chr6:143318083-143318227	NONHSAT115330

Extended variants
information (count: 48 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528005433	chr6:143318087-143318088	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs369790429	chr6:143318088-143318089	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs529765244	chr6:143318091-143318092	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs183418607	chr6:143318126-143318127	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs527349458	chr6:143318158-143318159	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs12663700	chr6:143318169-143318170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs12663705	chr6:143318176-143318177	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs374319318	chr6:143318208-143318209	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs530639671	chr6:143318218-143318219	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs140196667	chr6:143319267-143319268	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs192387831	chr6:143319355-143319356	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs575293982	chr6:143319379-143319380	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs559490451	chr6:143319390-143319391	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs527385361	chr6:143319406-143319407	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs547133516	chr6:143319425-143319426	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs9766261	chr6:143319459-143319460	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs186250559	chr6:143321668-143321669	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs530938737	chr6:143321672-143321673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs58185286	chr6:143321707-143321708	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs190375223	chr6:143321713-143321714	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs553673594	chr6:143321723-143321724	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs6570544	chr6:143321756-143321757	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs540242800	chr6:143321763-143321764	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs370550761	chr6:143321782-143321783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs375498408	chr6:143321809-143321810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs114657735	chr6:143321820-143321821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs374853427	chr6:143321898-143321899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs544359225	chr6:143321908-143321909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs199249	chr6:143321909-143321910	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs141582663	chr6:143321917-143321918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs551954222	chr6:143321922-143321923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs150893031	chr6:143321925-143321926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs377758960	chr6:143321935-143321936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs527980112	chr6:143321965-143321966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs549045957	chr6:143322003-143322004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs144000126	chr6:143322049-143322050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs567128196	chr6:143322057-143322058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs60830488	chr6:143322058-143322059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs61227020	chr6:143322059-143322060	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs548694296	chr6:143322067-143322068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs549885406	chr6:143322086-143322087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs568448888	chr6:143322135-143322136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs571293581	chr6:143322168-143322169	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs139404077	chr6:143322199-143322200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs537520747	chr6:143322230-143322231	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs74364774	chr6:143322238-143322239	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs190696513	chr6:143322316-143322317	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs536141941	chr6:143322349-143322350	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143321600-143323000	Enhancers	Brain Substantia Nigra	brain
2	chr6:143321800-143322800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:143322000-143322200	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:143322000-143322400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:143322000-143322600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:143322000-143322800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:143322200-143322600	Flanking Active TSS	Brain Cingulate Gyrus	brain
8	chr6:143322200-143322800	Enhancers	Brain Angular Gyrus	brain
9	chr6:143322200-143322800	Enhancers	Brain Inferior Temporal Lobe	brain

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