Variant report

Variant	rs61227020
Chromosome Location	chr6:143322059-143322060
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2184361	0.89[ASN][1000 genomes]
rs58185286	0.89[ASN][1000 genomes]
rs61456208	0.84[ASN][1000 genomes]
rs73777835	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3372336	chr6:143318059-143322357	Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143321600-143323000	Enhancers	Brain Substantia Nigra	brain
2	chr6:143321800-143322800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:143322000-143322200	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:143322000-143322400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:143322000-143322600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:143322000-143322800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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