Variant report

Variant	esv3372408
Chromosome Location	chr19:21094312-21098810
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21097861..21100856-chr19:21103633..21106940,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105750	chromatin interactions

Extended variants
information (count: 191 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:191 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62123245	chr19:21094328-21094329	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs547464804	chr19:21094369-21094370	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs567188932	chr19:21094383-21094384	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs369411137	chr19:21094386-21094387	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs142785030	chr19:21094416-21094417	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs146047895	chr19:21094475-21094476	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs555811064	chr19:21094515-21094516	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs569542866	chr19:21094519-21094520	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs538456773	chr19:21094520-21094521	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs373031005	chr19:21094521-21094522	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs558341544	chr19:21094522-21094523	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs112710446	chr19:21094538-21094539	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs578146095	chr19:21094539-21094540	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs73003412	chr19:21094600-21094601	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs188384536	chr19:21094611-21094612	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs370926713	chr19:21094613-21094614	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs192750564	chr19:21094630-21094631	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs183541832	chr19:21094666-21094667	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs562460381	chr19:21094670-21094671	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs531464814	chr19:21094720-21094721	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs544808757	chr19:21094728-21094729	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs144131934	chr19:21094746-21094747	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs146528123	chr19:21094747-21094748	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs140817749	chr19:21094752-21094753	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs561014377	chr19:21094779-21094780	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs149732227	chr19:21094790-21094791	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs145509226	chr19:21094872-21094873	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs549715701	chr19:21094898-21094899	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs188414625	chr19:21094914-21094915	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs192312018	chr19:21094934-21094935	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs371461676	chr19:21094964-21094965	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs538493120	chr19:21094981-21094982	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs552095165	chr19:21095020-21095021	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs571905817	chr19:21095021-21095022	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs184844530	chr19:21095028-21095029	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs553996872	chr19:21095035-21095036	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs574048116	chr19:21095040-21095041	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs536261959	chr19:21095060-21095061	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs556093294	chr19:21095078-21095079	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs62123246	chr19:21095089-21095090	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs148840395	chr19:21095115-21095116	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs76970355	chr19:21095129-21095130	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs376112401	chr19:21095133-21095134	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs541188955	chr19:21095163-21095164	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs78585175	chr19:21095167-21095168	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs529752836	chr19:21095178-21095179	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs137875413	chr19:21095179-21095180	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs534150181	chr19:21095192-21095193	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs62123247	chr19:21095205-21095206	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs115109311	chr19:21095222-21095223	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21087800-21095400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr19:21093600-21097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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