Variant report

Variant	esv3373294
Chromosome Location	chr15:40762085-40765033
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:468)
CpG islands
(count:854)
Chromatin interactive
region (count:17)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:468 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr15:40762822-40763044	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr15:40762809-40762959	K562	blood:	n/a	n/a
3	BCL3	chr15:40762984-40763346	GM12878	blood:	n/a	chr15:40763244-40763257 chr15:40763176-40763189 chr15:40763166-40763179
4	BHLHE40	chr15:40763583-40763783	GM12878	blood:	n/a	n/a
5	BHLHE40	chr15:40763769-40763773	K562	blood:	n/a	n/a
6	CBX3	chr15:40763666-40764061	K562	blood:	n/a	n/a
7	CCNT2	chr15:40762681-40763928	K562	blood:	n/a	chr15:40763395-40763404
8	CEBPB	chr15:40762503-40762871	Hela-S3	cervix:	n/a	chr15:40762676-40762687
9	CEBPB	chr15:40762543-40762812	K562	blood:	n/a	chr15:40762676-40762687
10	CEBPB	chr15:40762501-40762862	IMR90	lung:	n/a	chr15:40762676-40762687
11	CEBPB	chr15:40762504-40762871	K562	blood:	n/a	chr15:40762676-40762687
12	CEBPB	chr15:40762614-40762780	HepG2	liver:	n/a	chr15:40762676-40762687
13	CEBPB	chr15:40762503-40762881	HepG2	liver:	n/a	chr15:40762676-40762687
14	CEBPB	chr15:40762528-40762820	ECC-1	luminal epithelium:	n/a	chr15:40762676-40762687
15	CEBPB	chr15:40762493-40762862	HepG2	liver:	n/a	chr15:40762676-40762687
16	CEBPB	chr15:40762456-40762900	K562	blood:	n/a	chr15:40762676-40762687
17	CEBPB	chr15:40762567-40762816	A549	lung:	n/a	chr15:40762676-40762687
18	CEBPD	chr15:40762892-40763277	HepG2	liver:	n/a	n/a
19	CHD1	chr15:40763682-40764031	GM12878	blood:	n/a	n/a
20	CHD2	chr15:40762901-40763172	Hela-S3	cervix:	n/a	n/a
21	CHD2	chr15:40763993-40764242	H1-hESC	embryonic stem cell:	n/a	n/a
22	CHD2	chr15:40763556-40763566	HepG2	liver:	n/a	n/a
23	CHD2	chr15:40762605-40762776	GM12878	blood:	n/a	n/a
24	CHD2	chr15:40763686-40763726	GM12878	blood:	n/a	n/a
25	CHD2	chr15:40762894-40763073	HepG2	liver:	n/a	n/a
26	CHD2	chr15:40762793-40762815	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD2	chr15:40763670-40763678	K562	blood:	n/a	n/a
28	CHD2	chr15:40762612-40762802	K562	blood:	n/a	n/a
29	CREB1	chr15:40762950-40763308	A549	lung:	n/a	n/a
30	CTCF	chr15:40763010-40763063	GM10248	blood:	n/a	chr15:40763050-40763063
31	CTCF	chr15:40762900-40763050	K562	blood:	n/a	n/a
32	CTCF	chr15:40763000-40763150	GM12872	blood:	n/a	chr15:40763050-40763063
33	CTCF	chr15:40762920-40763070	GM12874	blood:	n/a	chr15:40763050-40763063
34	CTCF	chr15:40762920-40763070	WERI-Rb-1	eye:	n/a	chr15:40763050-40763063
35	CTCF	chr15:40763004-40763101	K562	blood:	n/a	chr15:40763050-40763063
36	CTCF	chr15:40763798-40763865	GM12892	blood:	n/a	n/a
37	CTCF	chr15:40763940-40764090	SAEC	small airway:	n/a	n/a
38	CTCF	chr15:40763940-40764090	GM12871	blood:	n/a	n/a
39	CTCF	chr15:40762940-40763090	AG04449	skin:	n/a	chr15:40763050-40763063
40	CTCF	chr15:40763238-40763263	Kidney_OC	kidney:	n/a	n/a
41	CTCF	chr15:40762856-40763266	K562	blood:	n/a	chr15:40763050-40763063
42	CTCF	chr15:40762920-40763070	HepG2	liver:	n/a	chr15:40763050-40763063
43	CTCF	chr15:40762944-40763170	HepG2	liver:	n/a	chr15:40763050-40763063
44	CTCF	chr15:40762980-40763130	GM12871	blood:	n/a	chr15:40763050-40763063
45	CTCF	chr15:40762965-40763108	GM12892	blood:	n/a	chr15:40763050-40763063
46	CTCF	chr15:40762940-40763090	HepG2	liver:	n/a	chr15:40763050-40763063
47	CTCF	chr15:40763849-40763875	GM19240	blood:	n/a	n/a
48	CTCF	chr15:40763909-40763922	GM19239	blood:	n/a	n/a
49	CTCF	chr15:40762966-40763114	GM12891	blood:	n/a	chr15:40763050-40763063
50	CTCF	chr15:40762860-40763010	WERI-Rb-1	eye:	n/a	n/a

(count:854 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:40763051-40763101	HAEpiC	amniotic membrane:	n/a
2	chr15:40763763-40763813	HCT-116	colon:	n/a
3	chr15:40763199-40763249	HEK293	kidney:	embryo
4	chr15:40762993-40763043	NHBE	bronchial:	n/a
5	chr15:40763763-40763813	NB4	blood:	n/a
6	chr15:40762864-40762914	HRE	kidney:	n/a
7	chr15:40763051-40763101	NH-A	brain:	n/a
8	chr15:40763763-40763813	ProgFib	skin:	n/a
9	chr15:40762864-40762914	Jurkat	blood:	n/a
10	chr15:40762807-40762857	GM06990	blood:	n/a
11	chr15:40763244-40763294	GM19239	blood:	n/a
12	chr15:40764831-40764881	HRPEpiC	eye:	n/a
13	chr15:40763073-40763123	AG04450	lung:	fetal
14	chr15:40764831-40764881	ProgFib	skin:	n/a
15	chr15:40763388-40763438	HepG2	liver:	n/a
16	chr15:40763995-40764045	HL-60	blood:	n/a
17	chr15:40763995-40764045	HRPEpiC	eye:	n/a
18	chr15:40763073-40763123	GM06990	blood:	n/a
19	chr15:40763244-40763294	NB4	blood:	n/a
20	chr15:40762807-40762857	CMK	blood:	n/a
21	chr15:40763247-40763297	HCF	heart:	n/a
22	chr15:40763244-40763294	PFSK-1	brain:	n/a
23	chr15:40764195-40764245	GM12891	blood:	n/a
24	chr15:40763522-40763572	HL-60	blood:	n/a
25	chr15:40763199-40763249	CMK	blood:	n/a
26	chr15:40763051-40763101	AG10803	skin:	n/a
27	chr15:40763073-40763123	AG09319	gingival:	n/a
28	chr15:40763244-40763294	AoSMC	blood vessel:	n/a
29	chr15:40763522-40763572	AG04449	skin:	fetal
30	chr15:40763763-40763813	GM19239	blood:	n/a
31	chr15:40763073-40763123	HNPCEpiC	eye:	n/a
32	chr15:40763199-40763249	SKMC	muscle:	n/a
33	chr15:40763244-40763294	PrEC	prostate:	n/a
34	chr15:40763244-40763294	IMR90	lung:	fetal
35	chr15:40764195-40764245	HRE	kidney:	n/a
36	chr15:40763388-40763438	HNPCEpiC	eye:	n/a
37	chr15:40762807-40762857	IMR90	lung:	fetal
38	chr15:40762807-40762857	HRCEpiC	kidney:	n/a
39	chr15:40764195-40764245	Hepatocyte	liver:	n/a
40	chr15:40762864-40762914	SKMC	muscle:	n/a
41	chr15:40763199-40763249	AG09309	skin:	n/a
42	chr15:40764195-40764245	HepG2	liver:	n/a
43	chr15:40762993-40763043	HCF	heart:	n/a
44	chr15:40763247-40763297	GM19239	blood:	n/a
45	chr15:40764831-40764881	BE2_C	brain:	n/a
46	chr15:40763244-40763294	ovcar-3	ovarian:	n/a
47	chr15:40764195-40764245	HCPEpiC	choroid plexus:	n/a
48	chr15:40763247-40763297	SAEC	small airway:	n/a
49	chr15:40763522-40763572	GM06990	blood:	n/a
50	chr15:40763051-40763101	NT2-D1	testis:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40764613..40768482-chr15:40771207..40776375,6	K562	blood:
2	chr15:40746042..40747567-chr15:40761663..40764195,2	MCF-7	breast:
3	chr15:40757114..40759999-chr15:40761935..40763724,3	MCF-7	breast:
4	chr15:40731823..40734826-chr15:40760868..40766207,7	K562	blood:
5	chr15:40762952..40763883-chr6:26056601..26057141,2	NB4	blood:
6	chr15:40721609..40723938-chr15:40763922..40765689,2	K562	blood:
7	chr15:40763158..40763829-chr15:66796805..66797653,2	HCT-116	colon:
8	chr15:40761789..40767637-chr15:40797359..40801640,7	K562	blood:
9	chr15:40749483..40752811-chr15:40761476..40764713,3	MCF-7	breast:
10	chr15:40763466..40765784-chr15:40773295..40775990,2	MCF-7	breast:
11	chr15:40749521..40751919-chr15:40759316..40762355,3	MCF-7	breast:
12	chr15:40761396..40764374-chr15:40800140..40802676,2	K562	blood:
13	chr15:40731794..40734704-chr15:40761511..40763222,2	MCF-7	breast:
14	chr15:40763301..40766173-chr15:40861522..40864181,2	K562	blood:
15	chr15:40721609..40724539-chr15:40764189..40766844,2	K562	blood:
16	chr15:40763768..40766540-chr15:40784281..40786409,2	K562	blood:
17	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAHD1-3	chr15:40764821-40765229	expReg_chr15_1980_+

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CHST14	hsa-miR-124-3p	chr15:40765002-40765022
2	CHST14	hsa-miR-124-3p	chr15:40765015-40765021

Variant related genes	Relation type
CHST14	TF binding region
ENSG00000259211	TF binding region
CHST14	CpG island
ENSG00000259211	CpG island
ENSG00000174442	chromatin interactions
ENSG00000244251	chromatin interactions
ENSG00000140320	chromatin interactions
ENSG00000174444	chromatin interactions
ENSG00000166133	chromatin interactions
ENSG00000259364	chromatin interactions
ENSG00000187837	chromatin interactions
ENSG00000259211	chromatin interactions
ENSG00000259536	chromatin interactions

Extended variants
information (count: 125 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:125 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537279855	chr15:40762118-40762119	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs184903617	chr15:40762143-40762144	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs558705181	chr15:40762159-40762160	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs533954292	chr15:40762185-40762186	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs570682980	chr15:40762196-40762197	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs190200353	chr15:40762231-40762232	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs74011158	chr15:40762275-40762276	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs71472442	chr15:40762290-40762291	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs141380351	chr15:40762292-40762293	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs553006808	chr15:40762321-40762322	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs556243763	chr15:40762345-40762346	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
12	rs146236864	chr15:40762347-40762348	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
13	rs139329707	chr15:40762349-40762350	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs553828069	chr15:40762366-40762367	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs576891573	chr15:40762372-40762373	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs373359458	chr15:40762384-40762385	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs574492968	chr15:40762386-40762387	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs61354248	chr15:40762399-40762400	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs572337338	chr15:40762463-40762464	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs542201344	chr15:40762511-40762512	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs541191259	chr15:40762546-40762547	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs559839247	chr15:40762549-40762550	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs532034594	chr15:40762581-40762582	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs545795854	chr15:40762598-40762599	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs9672313	chr15:40762621-40762622	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs531334558	chr15:40762681-40762682	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs59322420	chr15:40762705-40762706	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs397963102	chr15:40762707-40762708	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs369568423	chr15:40762732-40762733	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs373120964	chr15:40762768-40762769	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs143661163	chr15:40762838-40762839	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs633295	chr15:40762842-40762843	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs547566991	chr15:40762854-40762855	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs56908156	chr15:40762862-40762863	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs539588795	chr15:40762870-40762871	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs118118557	chr15:40762879-40762880	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs565101523	chr15:40762913-40762914	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs569976002	chr15:40762974-40762975	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs185409383	chr15:40763001-40763002	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs555798890	chr15:40763228-40763229	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
41	rs12902521	chr15:40763238-40763239	Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
42	rs572374791	chr15:40763329-40763330	Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
43	rs541231571	chr15:40763380-40763381	Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
44	rs557892405	chr15:40763381-40763382	Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
45	rs577809616	chr15:40763470-40763471	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
46	rs545629118	chr15:40763511-40763512	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs562582335	chr15:40763516-40763517	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs397518432	chr15:40763557-40763558	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs199749498	chr15:40763563-40763564	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
50	rs139908298	chr15:40763575-40763576	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:694 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40742400-40762200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:40747400-40762600	Weak transcription	HUVEC	blood vessel
3	chr15:40749200-40762600	Weak transcription	Psoas Muscle	Psoas
4	chr15:40749200-40762800	Weak transcription	Small Intestine	intestine
5	chr15:40749400-40762200	Weak transcription	Fetal Heart	heart
6	chr15:40749400-40762400	Weak transcription	Right Atrium	heart
7	chr15:40749800-40762200	Weak transcription	Fetal Brain Male	brain
8	chr15:40750400-40762400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40755000-40762200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:40757400-40762400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:40757800-40762400	Weak transcription	Hela-S3	cervix
12	chr15:40758000-40762200	Weak transcription	Fetal Kidney	kidney
13	chr15:40758000-40762200	Weak transcription	Fetal Lung	lung
14	chr15:40758200-40762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:40758200-40762200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:40758200-40762200	Weak transcription	Primary B cells from cord blood	blood
17	chr15:40758200-40762200	Weak transcription	HepG2	liver
18	chr15:40758200-40762400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:40758200-40762400	Weak transcription	A549	lung
20	chr15:40758200-40762400	Weak transcription	NHLF	lung
21	chr15:40758400-40762200	Weak transcription	NH-A	brain
22	chr15:40758400-40762400	Weak transcription	Brain Angular Gyrus	brain
23	chr15:40758400-40762400	Weak transcription	Brain Substantia Nigra	brain
24	chr15:40758600-40762600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr15:40758800-40762400	Weak transcription	Colonic Mucosa	Colon
26	chr15:40759000-40762200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr15:40759000-40762200	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:40759000-40762600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:40759200-40762200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:40759200-40762200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:40759200-40762200	Weak transcription	Stomach Mucosa	stomach
32	chr15:40759200-40762200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr15:40759200-40762600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:40759400-40762200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:40759400-40762200	Weak transcription	Liver	Liver
36	chr15:40759400-40762200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:40759400-40762400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:40759400-40762400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:40759400-40762400	Weak transcription	Left Ventricle	heart
40	chr15:40759400-40762600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:40759400-40763400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:40759600-40762200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:40759600-40762200	Weak transcription	Dnd41	blood
44	chr15:40759600-40762400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr15:40759600-40762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:40759600-40762400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:40759600-40762400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:40759600-40762400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:40759600-40762400	Weak transcription	Esophagus	oesophagus
50	chr15:40759600-40762400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links