Variant report

Variant	rs553828069
Chromosome Location	chr15:40762366-40762367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:40762249-40763049	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr15:40762141-40763161	GM12891	blood:	n/a	n/a
3	POLR2A	chr15:40762156-40764091	GM12892	blood:	n/a	n/a
4	POLR2A	chr15:40762275-40763451	MCF-7	breast:	n/a	n/a
5	POLR2A	chr15:40762146-40763153	GM12892	blood:	n/a	n/a
6	POLR2A	chr15:40762124-40764649	HepG2	liver:	n/a	n/a
7	POLR2A	chr15:40762365-40762417	GM12878	blood:	n/a	n/a
8	POLR2A	chr15:40762194-40763079	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:40762116-40764390	K562	blood:	n/a	n/a
10	POLR2A	chr15:40762287-40762626	GM12878	blood:	n/a	n/a
11	MAX	chr15:40762214-40763305	K562	blood:	n/a	chr15:40762698-40762707 chr15:40763164-40763174
12	NFATC1	chr15:40762314-40762831	GM12878	blood:	n/a	n/a
13	POLR2A	chr15:40762263-40762563	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:40761957-40762420	K562	blood:	n/a	n/a
15	MAZ	chr15:40761986-40764139	IMR90	lung:	n/a	chr15:40762698-40762707 chr15:40763164-40763174
16	POLR2A	chr15:40760705-40763222	K562	blood:	n/a	n/a
17	POLR2A	chr15:40761478-40764066	PFSK-1	brain:	n/a	n/a
18	POLR2A	chr15:40762242-40763272	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr15:40762106-40762403	GM12878	blood:	n/a	n/a
20	POLR2A	chr15:40761894-40763915	PANC-1	pancreas:	n/a	n/a
21	POLR2A	chr15:40762047-40763141	SK-N-MC	brain:	n/a	n/a
22	POLR2A	chr15:40762364-40763179	U87	brain:	n/a	n/a
23	POLR2A	chr15:40762331-40764539	Raji	blood:	n/a	n/a
24	POLR2A	chr15:40762098-40763323	GM12878	blood:	n/a	n/a
25	POLR2A	chr15:40761862-40763389	PFSK-1	brain:	n/a	n/a
26	MXI1	chr15:40761250-40764780	SK-N-SH	brain:	n/a	chr15:40762694-40762709 chr15:40761744-40761753
27	REST	chr15:40762066-40762426	PFSK-1	brain:	n/a	n/a
28	POLR2A	chr15:40762202-40764371	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr15:40760939-40764365	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr15:40761715-40764293	K562	blood:	n/a	n/a
31	POLR2A	chr15:40762242-40764164	NB4	blood:	n/a	n/a
32	FOSL2	chr15:40762286-40763164	HepG2	liver:	n/a	chr15:40762862-40762871 chr15:40763042-40763053
33	POLR2A	chr15:40762170-40763117	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:40731621..40739951-chr15:40753297..40765462,23	K562	blood:
2	chr15:40757114..40759999-chr15:40761935..40763724,3	MCF-7	breast:
3	chr15:40746042..40747567-chr15:40761663..40764195,2	MCF-7	breast:
4	chr15:40761789..40767637-chr15:40797359..40801640,7	K562	blood:
5	chr15:40731794..40734704-chr15:40761511..40763222,2	MCF-7	breast:
6	chr15:40731823..40734826-chr15:40760868..40766207,7	K562	blood:
7	chr15:40761396..40764374-chr15:40800140..40802676,2	K562	blood:
8	chr15:40749483..40752811-chr15:40761476..40764713,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259211	TF binding region
CHST14	TF binding region
ENSG00000140320	Chromatin interaction
ENSG00000259211	Chromatin interaction
ENSG00000259536	Chromatin interaction
ENSG00000259364	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv3373294	chr15:40762085-40765033	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40747400-40762600	Weak transcription	HUVEC	blood vessel
2	chr15:40749200-40762600	Weak transcription	Psoas Muscle	Psoas
3	chr15:40749200-40762800	Weak transcription	Small Intestine	intestine
4	chr15:40749400-40762400	Weak transcription	Right Atrium	heart
5	chr15:40750400-40762400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:40757400-40762400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:40757800-40762400	Weak transcription	Hela-S3	cervix
8	chr15:40758200-40762400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:40758200-40762400	Weak transcription	A549	lung
10	chr15:40758200-40762400	Weak transcription	NHLF	lung
11	chr15:40758400-40762400	Weak transcription	Brain Angular Gyrus	brain
12	chr15:40758400-40762400	Weak transcription	Brain Substantia Nigra	brain
13	chr15:40758600-40762600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:40758800-40762400	Weak transcription	Colonic Mucosa	Colon
15	chr15:40759000-40762600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:40759200-40762600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:40759400-40762400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:40759400-40762400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:40759400-40762400	Weak transcription	Left Ventricle	heart
20	chr15:40759400-40762600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:40759400-40763400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:40759600-40762400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr15:40759600-40762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:40759600-40762400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:40759600-40762400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:40759600-40762400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:40759600-40762400	Weak transcription	Esophagus	oesophagus
28	chr15:40759600-40762400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:40759600-40762400	Weak transcription	Right Ventricle	heart
30	chr15:40759600-40762600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:40759600-40762600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:40759600-40762600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:40759600-40762600	Weak transcription	Ovary	ovary
34	chr15:40759600-40762600	Weak transcription	GM12878-XiMat	blood
35	chr15:40759800-40762400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:40759800-40762400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:40759800-40762400	Weak transcription	Aorta	Aorta
38	chr15:40759800-40762400	Weak transcription	Brain Anterior Caudate	brain
39	chr15:40759800-40762400	Weak transcription	Brain Germinal Matrix	brain
40	chr15:40759800-40762400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:40759800-40762400	Weak transcription	Lung	lung
42	chr15:40759800-40762600	Weak transcription	Fetal Thymus	thymus
43	chr15:40759800-40762600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:40760000-40762400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:40760000-40762400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:40760000-40762600	Weak transcription	HSMMtube	muscle
47	chr15:40760200-40762400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:40760200-40762600	Weak transcription	Thymus	Thymus
49	chr15:40760400-40762400	Weak transcription	Fetal Brain Female	brain
50	chr15:40760600-40762600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links