Variant report

Variant	esv3377084
Chromosome Location	chr2:186029957-186032105
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:18)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
2	lnc-ZSWIM2-7	chr2:186031578-186031663	XLOC_002424
3	lnc-ZNF804A-1	chr2:186031549-186031553	XLOC_001780
4	lnc-ZNF804A-1	chr2:186031776-186031910	XLOC_001780
5	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
6	lnc-ZSWIM2-7	chr2:186031578-186031663	XLOC_002424
7	lnc-ZSWIM2-7	chr2:186031578-186031663	XLOC_002424
8	lnc-ZSWIM2-7	chr2:186031776-186031910	XLOC_002424
9	lnc-ZNF804A-1	chr2:186031529-186031553	XLOC_001780
10	lnc-ZNF804A-1	chr2:186031533-186031553	NONHSAT075957
11	lnc-ZNF804A-1	chr2:186031561-186031590	XLOC_001780
12	lnc-ZSWIM2-7	chr2:186030166-186030185	XLOC_002424
13	lnc-ZNF804A-1	chr2:186031549-186031553	XLOC_001780
14	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
15	lnc-ZSWIM2-7	chr2:186031776-186031907	XLOC_002424
16	lnc-ZNF804A-1	chr2:186031789-186031910	NONHSAT075957
17	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
18	lnc-ZSWIM2-7	chr2:186031776-186031910	XLOC_002424

No data

Variant related genes	Relation type
TGFBR1	miRNA target sites
VBP1	miRNA target sites
SRPK2	miRNA target sites
KDELC1	miRNA target sites
CTSC	miRNA target sites
CTSA	miRNA target sites
PTPN1	miRNA target sites
KIF5A	miRNA target sites

Extended variants
information (count: 13 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558589304	chr2:186030183-186030184	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs139867048	chr2:186031538-186031539	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs189934561	chr2:186031562-186031563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573874499	chr2:186031573-186031574	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs182505254	chr2:186031609-186031610	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs6704753	chr2:186031626-186031627	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs566118028	chr2:186031644-186031645	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs550705309	chr2:186031785-186031786	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs116312316	chr2:186031788-186031789	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs145384352	chr2:186031806-186031807	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs551351793	chr2:186031829-186031830	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs566746080	chr2:186031842-186031843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs562582468	chr2:186031868-186031869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Ependymoma	16718352	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	18522746	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	16272173	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Autism	16446308	CNVD
Autism	19401682	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
Glioblastoma	21080181	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Facial dysmorphism	20548289	CNVD
Mental retardation	20548289	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Sudden cardiac death	19188705	CNVD
Autism	19329560	CNVD
Autism	22543975	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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