Variant report

Variant	rs562582468
Chromosome Location	chr2:186031868-186031869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

No data

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
2	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
3	lnc-ZSWIM2-7	chr2:186031776-186031907	XLOC_002424
4	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
5	lnc-ZSWIM2-7	chr2:186031776-186031910	XLOC_002424
6	lnc-ZNF804A-1	chr2:186031776-186031910	XLOC_001780
7	lnc-ZNF804A-1	chr2:186031789-186031910	XLOC_001780
8	lnc-ZSWIM2-7	chr2:186031776-186031910	XLOC_002424
9	lnc-ZNF804A-1	chr2:186031789-186031910	NONHSAT075957

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv520974	chr2:185742474-186148230	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv875514	chr2:185865740-186239607	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv584006	chr2:185930659-186124709	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv984444	chr2:185960960-186067534	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv834485	chr2:185977613-186148482	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv875515	chr2:185992567-186239607	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv459981	chr2:186025368-186124709	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv584007	chr2:186025368-186124709	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2753539	chr2:186025368-186216101	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv997463	chr2:186028982-186172416	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv1002783	chr2:186028982-186174063	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1001137	chr2:186028982-186186648	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	esv3377084	chr2:186029957-186032105	Inactive region	lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv875516	chr2:186031490-186124709	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	nsv875517	chr2:186031490-186239607	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links