Variant report

Variant	esv3377701
Chromosome Location	chr5:98438309-98438838
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs34246603	chr5:98438318-98438319	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs550589739	chr5:98438376-98438377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs575416866	chr5:98438382-98438383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs569919610	chr5:98438398-98438399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs116010951	chr5:98438408-98438409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs549159968	chr5:98438451-98438452	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567303665	chr5:98438473-98438474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs73148434	chr5:98438493-98438494	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs553072992	chr5:98438494-98438495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs577839069	chr5:98438524-98438525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs538620398	chr5:98438532-98438533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs556720779	chr5:98438610-98438611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540051669	chr5:98438623-98438624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs575888497	chr5:98438633-98438634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558138708	chr5:98438646-98438647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs561635255	chr5:98438679-98438680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573322924	chr5:98438689-98438690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs573491298	chr5:98438726-98438727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs181131599	chr5:98438744-98438745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs540624695	chr5:98438756-98438757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs565018087	chr5:98438782-98438783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs6880487	chr5:98438818-98438819	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98438200-98438600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98438600-98441000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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