Variant report
| Variant | rs6880487 |
|---|---|
| Chromosome Location | chr5:98438818-98438819 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10056306 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10060754 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10064016 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11242579 | 0.89[CHB][hapmap] |
| rs1374660 | 0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17735547 | 0.81[AFR][1000 genomes] |
| rs2121666 | 0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2121667 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2121668 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2369574 | 0.86[ASN][1000 genomes] |
| rs4329038 | 0.86[ASN][1000 genomes] |
| rs57154911 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61198176 | 0.86[ASN][1000 genomes] |
| rs6596673 | 0.86[ASN][1000 genomes] |
| rs6596679 | 0.86[ASN][1000 genomes] |
| rs6596680 | 0.86[ASN][1000 genomes] |
| rs6596681 | 0.86[ASN][1000 genomes] |
| rs6596702 | 0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7712453 | 0.86[ASN][1000 genomes] |
| rs7717324 | 0.85[CEU][hapmap];0.89[CHB][hapmap] |
| rs7730656 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv882417 | chr5:98428184-98548315 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv3377701 | chr5:98438309-98438838 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98438600-98441000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
