Variant report

Variant	rs7730656
Chromosome Location	chr5:98443274-98443275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10056306	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10060754	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10064016	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374660	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17166694	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2121666	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2121667	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2121668	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2369574	0.86[ASN][1000 genomes]
rs4329038	0.86[ASN][1000 genomes]
rs57154911	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61198176	0.86[ASN][1000 genomes]
rs6596673	0.86[ASN][1000 genomes]
rs6596679	0.86[ASN][1000 genomes]
rs6596680	0.86[ASN][1000 genomes]
rs6596681	0.86[ASN][1000 genomes]
rs6596702	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6880487	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7712453	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv882417	chr5:98428184-98548315	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv482367	chr5:98440337-98606909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98443000-98443400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:98443000-98443400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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