Variant report

Variant	rs2121668
Chromosome Location	chr5:98423044-98423045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10054188	0.80[ASN][1000 genomes]
rs10056306	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064016	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11242579	1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11742975	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12659212	0.80[ASN][1000 genomes]
rs12659251	0.80[ASN][1000 genomes]
rs1374660	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2121666	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121667	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2369574	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377731	0.86[CHB][hapmap]
rs4329038	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55946434	0.80[ASN][1000 genomes]
rs56161473	0.80[ASN][1000 genomes]
rs57154911	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57544561	0.80[ASN][1000 genomes]
rs61110940	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61198176	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596673	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596679	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596680	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596681	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596702	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6866426	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6880487	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6888668	0.80[ASN][1000 genomes]
rs6890939	0.80[ASN][1000 genomes]
rs7700837	0.80[ASN][1000 genomes]
rs7712453	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714788	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7717324	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7730642	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7730656	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7735294	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7737983	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98414600-98423600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98423000-98423400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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