Variant report

Variant	rs377731
Chromosome Location	chr5:98332239-98332240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98286475..98288503-chr5:98329447..98332320,2	MCF-7	breast:
2	chr5:98264191..98266799-chr5:98330769..98334496,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10038192	0.82[EUR][1000 genomes]
rs10040066	0.82[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs10050423	0.82[EUR][1000 genomes]
rs10076291	0.82[EUR][1000 genomes]
rs10479345	0.82[EUR][1000 genomes]
rs10479346	0.82[EUR][1000 genomes]
rs1093794	0.83[EUR][1000 genomes]
rs1104262	0.83[EUR][1000 genomes]
rs11242567	0.81[CEU][hapmap]
rs11242579	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11949103	0.82[EUR][1000 genomes]
rs11950452	0.81[EUR][1000 genomes]
rs11950855	0.82[EUR][1000 genomes]
rs11960896	0.81[EUR][1000 genomes]
rs12189335	0.82[EUR][1000 genomes]
rs13155749	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179812	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1472622	0.82[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs1501911	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs161935	0.81[EUR][1000 genomes]
rs161936	0.81[EUR][1000 genomes]
rs162341	0.81[EUR][1000 genomes]
rs2455423	0.83[EUR][1000 genomes]
rs2927646	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2927647	0.82[EUR][1000 genomes]
rs2927648	0.83[EUR][1000 genomes]
rs2927654	0.83[EUR][1000 genomes]
rs2937709	0.82[EUR][1000 genomes]
rs326479	0.90[AMR][1000 genomes]
rs326490	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs326493	0.81[EUR][1000 genomes]
rs34489	0.81[EUR][1000 genomes]
rs34490	0.81[EUR][1000 genomes]
rs34491	0.80[EUR][1000 genomes]
rs34496	0.81[EUR][1000 genomes]
rs34497	0.81[EUR][1000 genomes]
rs34499	0.81[EUR][1000 genomes]
rs363929	0.80[EUR][1000 genomes]
rs366000	0.82[EUR][1000 genomes]
rs366353	0.81[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs378089	0.83[EUR][1000 genomes]
rs380156	0.83[EUR][1000 genomes]
rs393697	0.83[EUR][1000 genomes]
rs395668	0.83[EUR][1000 genomes]
rs398436	0.83[EUR][1000 genomes]
rs407562	0.83[EUR][1000 genomes]
rs4128275	0.80[AFR][1000 genomes]
rs416750	0.83[EUR][1000 genomes]
rs422127	0.83[EUR][1000 genomes]
rs434039	0.81[EUR][1000 genomes]
rs443726	0.83[EUR][1000 genomes]
rs447044	0.84[EUR][1000 genomes]
rs449204	0.83[EUR][1000 genomes]
rs451141	0.83[EUR][1000 genomes]
rs4565239	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs4703049	0.83[EUR][1000 genomes]
rs4703052	0.82[EUR][1000 genomes]
rs4703340	0.82[EUR][1000 genomes]
rs539024	0.82[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs559574	0.83[EUR][1000 genomes]
rs709390	0.83[EUR][1000 genomes]
rs7710032	0.83[EUR][1000 genomes]
rs7711061	0.83[EUR][1000 genomes]
rs7717324	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7735379	0.80[ASN][1000 genomes]
rs819230	0.89[JPT][hapmap]
rs819232	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98329800-98332600	Weak transcription	Placenta	Placenta
2	chr5:98330800-98333000	Weak transcription	HepG2	liver
3	chr5:98331800-98336800	Weak transcription	Stomach Mucosa	stomach
4	chr5:98332200-98333200	Enhancers	NHDF-Ad	bronchial
5	chr5:98332200-98334200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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