Variant report
| Variant | rs7735379 |
|---|---|
| Chromosome Location | chr5:98376196-98376197 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10054188 | 0.86[ASN][1000 genomes] |
| rs11242579 | 0.85[ASN][1000 genomes] |
| rs11742975 | 0.85[ASN][1000 genomes] |
| rs11750764 | 0.89[ASN][1000 genomes] |
| rs12659212 | 0.86[ASN][1000 genomes] |
| rs12659251 | 0.86[ASN][1000 genomes] |
| rs13155749 | 0.80[ASN][1000 genomes] |
| rs377731 | 0.80[ASN][1000 genomes] |
| rs4128275 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55946434 | 0.86[ASN][1000 genomes] |
| rs56161473 | 0.86[ASN][1000 genomes] |
| rs57544561 | 0.86[ASN][1000 genomes] |
| rs59910509 | 0.85[ASN][1000 genomes] |
| rs61110940 | 0.85[ASN][1000 genomes] |
| rs6888668 | 0.86[ASN][1000 genomes] |
| rs6890939 | 0.86[ASN][1000 genomes] |
| rs7700837 | 0.86[ASN][1000 genomes] |
| rs7717324 | 0.85[ASN][1000 genomes] |
| rs7730642 | 0.83[ASN][1000 genomes] |
| rs7735294 | 0.83[ASN][1000 genomes] |
| rs7737983 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7735379 | RGMB | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98374800-98377000 | Weak transcription | Primary B cells from peripheral blood | blood |
