Variant report

Variant	esv33801
Chromosome Location	chr6:15696893-15710520
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15696754..15698975-chr6:15892314..15894571,2	K562	blood:
2	chr6:15704050..15705965-chr6:16130583..16132835,2	K562	blood:
3	chr6:15707898..15710276-chr6:15713020..15715412,2	K562	blood:
4	chr6:15696979..15700313-chr6:15702500..15706211,4	K562	blood:
5	chr6:15696979..15700313-chr6:15702500..15706211,4	K562	blood:
6	chr6:15706446..15709163-chr6:16128101..16131786,4	K562	blood:
7	chr6:15696889..15699233-chr6:16129184..16131192,3	MCF-7	breast:
8	chr6:15696361..15699402-chr6:16127550..16130271,4	K562	blood:
9	chr6:15704434..15705965-chr6:16129192..16132083,2	K562	blood:
10	chr6:15699736..15701337-chr6:16129542..16132196,2	K562	blood:
11	chr6:15708630..15712705-chr6:16139075..16141924,3	K562	blood:
12	chr6:15698629..15701193-chr6:15707870..15711464,3	K562	blood:
13	chr6:15692594..15695303-chr6:15695960..15699366,3	K562	blood:
14	chr6:15698629..15701193-chr6:15707870..15711464,3	K562	blood:
15	chr6:15697857..15699700-chr6:16052665..16055384,2	K562	blood:
16	chr6:15709788..15714363-chr6:16138909..16141924,4	K562	blood:
17	chr6:15696534..15698771-chr6:15883531..15885390,2	K562	blood:
18	chr6:15701703..15703207-chr6:16129315..16131066,2	K562	blood:
19	chr6:15695993..15699402-chr6:16128189..16132296,4	K562	blood:
20	chr6:15699837..15703207-chr6:16128795..16131066,3	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-7	chr6:15708733-15708781	NONHSAT107877
2	lnc-DTNBP1-7	chr6:15708809-15709169	NONHSAT107877

No data

Variant related genes	Relation type
ENSG00000263712	chromatin interactions
ENSG00000007944	chromatin interactions

Extended variants
information (count: 491 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:491 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs146311386	chr6:15696894-15696895	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs6939629	chr6:15696896-15696897	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs180847324	chr6:15696942-15696943	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs35242692	chr6:15696982-15696983	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs34602860	chr6:15697002-15697003	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs185888333	chr6:15697003-15697004	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs35680766	chr6:15697050-15697051	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs139757398	chr6:15697074-15697075	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs190263683	chr6:15697079-15697080	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs576699592	chr6:15697081-15697082	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs539265486	chr6:15697095-15697096	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs2031819	chr6:15697116-15697117	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs373703333	chr6:15697135-15697136	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs557951180	chr6:15697147-15697148	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs35282434	chr6:15697272-15697273	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs541554516	chr6:15697365-15697366	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs572696982	chr6:15697379-15697380	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs541553729	chr6:15697430-15697431	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs561210101	chr6:15697467-15697468	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs574804497	chr6:15697468-15697469	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs543421340	chr6:15697471-15697472	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs80348056	chr6:15697482-15697483	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs182522591	chr6:15697506-15697507	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs74639461	chr6:15697519-15697520	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs560036749	chr6:15697521-15697522	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs186806725	chr6:15697550-15697551	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs115962497	chr6:15697559-15697560	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs2031818	chr6:15697582-15697583	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs530550707	chr6:15697593-15697594	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs550127321	chr6:15697614-15697615	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs570425501	chr6:15697632-15697633	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs547306216	chr6:15697635-15697636	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs539393832	chr6:15697639-15697640	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs146638893	chr6:15697654-15697655	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs566363708	chr6:15697666-15697667	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs149179855	chr6:15697738-15697739	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs191711914	chr6:15697745-15697746	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs184022749	chr6:15697758-15697759	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs57492943	chr6:15697788-15697789	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs142416952	chr6:15697845-15697846	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs369132390	chr6:15697882-15697883	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs577308494	chr6:15697907-15697908	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs60357706	chr6:15697981-15697982	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs555608828	chr6:15697994-15697995	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs565956938	chr6:15698043-15698044	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs529247685	chr6:15698066-15698067	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs542030374	chr6:15698103-15698104	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs151164680	chr6:15698110-15698111	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs534844395	chr6:15698125-15698126	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs550165901	chr6:15698152-15698153	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
abnormal development	18461090	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	16790693	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17142309	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Ovarian cancer	20844748	CNVD
Developmental delay	19490664	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15692200-15698200	Weak transcription	K562	blood
2	chr6:15698200-15699600	ZNF genes & repeats	K562	blood
3	chr6:15703000-15703600	Weak transcription	Psoas Muscle	Psoas
4	chr6:15703600-15704000	ZNF genes & repeats	Psoas Muscle	Psoas
5	chr6:15704000-15704400	Weak transcription	Psoas Muscle	Psoas
6	chr6:15705800-15706200	Enhancers	Brain Anterior Caudate	brain
7	chr6:15705800-15706200	Enhancers	Brain Substantia Nigra	brain

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