Variant report

Variant	rs60357706
Chromosome Location	chr6:15697981-15697982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15696889..15699233-chr6:16129184..16131192,3	MCF-7	breast:
2	chr6:15696361..15699402-chr6:16127550..16130271,4	K562	blood:
3	chr6:15692594..15695303-chr6:15695960..15699366,3	K562	blood:
4	chr6:15696979..15700313-chr6:15702500..15706211,4	K562	blood:
5	chr6:15696754..15698975-chr6:15892314..15894571,2	K562	blood:
6	chr6:15695993..15699402-chr6:16128189..16132296,4	K562	blood:
7	chr6:15696534..15698771-chr6:15883531..15885390,2	K562	blood:
8	chr6:15697857..15699700-chr6:16052665..16055384,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11965065	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966189	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16876807	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16876830	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56801765	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57492943	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57856891	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60860775	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6930152	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73375448	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73375450	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73375453	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73375455	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7753185	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv433377	chr6:15686225-15713759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv33801	chr6:15696893-15710520	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15692200-15698200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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