Variant report

Variant	rs11965065
Chromosome Location	chr6:15730270-15730271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15729983..15731869-chr6:16128035..16130955,3	K562	blood:
2	chr6:15723984..15726678-chr6:15729144..15731299,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11966189	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16876830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887605	0.85[JPT][hapmap]
rs220890	0.85[JPT][hapmap]
rs220891	0.85[JPT][hapmap]
rs220896	0.85[JPT][hapmap]
rs398785	0.82[JPT][hapmap]
rs420350	0.85[JPT][hapmap]
rs56801765	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57492943	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57856891	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60357706	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60860775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68169394	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6930152	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375461	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74111	0.85[JPT][hapmap]
rs7753185	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9464820	0.85[JPT][hapmap]
rs9476903	0.85[JPT][hapmap]
rs9476904	0.85[JPT][hapmap]
rs9476913	0.85[JPT][hapmap]
rs9791290	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs990062	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15721200-15736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:15728800-15733400	Weak transcription	Fetal Heart	heart
3	chr6:15729000-15730400	Enhancers	K562	blood
4	chr6:15729600-15731200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:15730000-15731800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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