Variant report

Variant	rs74111
Chromosome Location	chr6:15786602-15786603
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15785339..15788012-chr6:15788868..15790666,2	MCF-7	breast:
2	chr6:15785790..15789204-chr6:16129110..16133019,3	K562	blood:
3	chr6:15784886..15786712-chr6:15791467..15793235,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11965065	0.85[JPT][hapmap]
rs12110659	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap]
rs13202323	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13211098	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16876807	0.85[JPT][hapmap]
rs17411020	0.87[ASN][1000 genomes]
rs17476541	0.87[ASN][1000 genomes]
rs183397	1.00[CEU][hapmap];0.87[YRI][hapmap];0.89[EUR][1000 genomes]
rs1887605	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs191986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1927580	0.84[ASN][1000 genomes]
rs1927581	0.82[ASN][1000 genomes]
rs2002087	0.90[ASN][1000 genomes]
rs2007855	0.93[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs220890	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220891	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220894	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220895	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs220896	0.81[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220897	0.83[EUR][1000 genomes]
rs220898	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs220899	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs220900	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs220901	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220904	0.83[EUR][1000 genomes]
rs220905	0.83[EUR][1000 genomes]
rs220907	0.81[EUR][1000 genomes]
rs220908	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs220911	0.83[EUR][1000 genomes]
rs220913	0.82[EUR][1000 genomes]
rs220914	0.82[EUR][1000 genomes]
rs220917	0.87[EUR][1000 genomes]
rs220918	0.87[EUR][1000 genomes]
rs220919	0.87[EUR][1000 genomes]
rs220920	0.88[EUR][1000 genomes]
rs374814	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs387816	0.82[CEU][hapmap]
rs398785	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs413080	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs420350	0.92[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs552546	0.82[CEU][hapmap]
rs56795754	0.85[ASN][1000 genomes]
rs62395049	0.82[ASN][1000 genomes]
rs62396773	0.87[ASN][1000 genomes]
rs6908590	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6914413	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6925310	1.00[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs9464820	0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9464821	0.82[CHB][hapmap]
rs9464828	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9464829	1.00[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs9476903	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs9476904	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9476908	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9476909	0.90[ASN][1000 genomes]
rs9476910	0.90[ASN][1000 genomes]
rs9476913	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9476930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9476931	0.89[EUR][1000 genomes]
rs9476932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9476936	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9476941	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[MEX][hapmap]
rs990062	0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15782400-15789200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:15785600-15791200	Weak transcription	Gastric	stomach

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