Variant report

Variant	rs191986
Chromosome Location	chr6:15791150-15791151
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15789517..15794468-chr6:16128845..16131804,5	K562	blood:
3	chr6:15789517..15791820-chr6:16129566..16131804,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11751408	0.81[ASN][1000 genomes]
rs12110659	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[ASN][1000 genomes]
rs13198914	0.85[ASN][1000 genomes]
rs13202323	0.80[AMR][1000 genomes]
rs13211098	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13219486	0.89[ASN][1000 genomes]
rs17477477	0.81[ASN][1000 genomes]
rs183397	1.00[CEU][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1887605	0.90[CHD][hapmap]
rs2007855	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220890	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220891	0.88[CEU][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220894	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220895	0.89[CEU][hapmap]
rs220896	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs220898	0.89[CEU][hapmap]
rs220899	0.89[CEU][hapmap]
rs220900	0.89[CEU][hapmap]
rs220901	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220908	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs220914	0.80[EUR][1000 genomes]
rs220917	0.85[EUR][1000 genomes]
rs220918	0.85[EUR][1000 genomes]
rs220919	0.86[EUR][1000 genomes]
rs220920	0.85[EUR][1000 genomes]
rs374814	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs387816	0.82[CEU][hapmap]
rs398785	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs413080	0.89[CEU][hapmap]
rs420350	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4348320	0.85[ASN][1000 genomes]
rs552546	0.82[CEU][hapmap]
rs62394862	0.81[ASN][1000 genomes]
rs62396773	1.00[ASN][1000 genomes]
rs6908590	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925310	1.00[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs6941542	0.85[ASN][1000 genomes]
rs74111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9464820	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs9464821	0.82[CHB][hapmap]
rs9464828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464829	1.00[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs9464833	0.85[ASN][1000 genomes]
rs9476903	1.00[CHD][hapmap];0.91[MEX][hapmap]
rs9476904	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs9476913	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476931	0.94[EUR][1000 genomes]
rs9476932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476936	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476940	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9476941	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[ASN][1000 genomes]
rs990062	0.86[CHB][hapmap];0.90[CHD][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15785600-15791200	Weak transcription	Gastric	stomach
2	chr6:15790600-15792200	Enhancers	Fetal Brain Female	brain
3	chr6:15790600-15793600	Enhancers	Fetal Intestine Small	intestine
4	chr6:15790600-15794600	Enhancers	Fetal Intestine Large	intestine
5	chr6:15790800-15792200	Enhancers	Fetal Brain Male	brain
6	chr6:15790800-15793800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:15791000-15791200	Enhancers	Psoas Muscle	Psoas
8	chr6:15791000-15791400	Enhancers	HepG2	liver
9	chr6:15791000-15792000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:15791000-15792000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:15791000-15792400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:15791000-15793800	Enhancers	Pancreas	Pancrea
13	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle

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