Variant report

Variant	rs6925310
Chromosome Location	chr6:15794704-15794705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15788511..15792316-chr6:15794070..15797091,4	K562	blood:
2	chr6:15793178..15795083-chr6:15797445..15798994,2	K562	blood:
3	chr6:15786898..15789429-chr6:15792470..15795145,2	K562	blood:
4	chr6:15793762..15796353-chr6:16127942..16129864,3	MCF-7	breast:
5	chr6:15793143..15797186-chr6:15800762..15804369,3	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1109287	0.86[CHB][hapmap];0.94[CHD][hapmap]
rs12110659	0.82[CEU][hapmap]
rs13211098	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs183397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs191986	1.00[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs1927579	0.86[CHB][hapmap]
rs2007855	0.89[CEU][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs2146594	0.86[CHB][hapmap];0.94[CHD][hapmap];0.82[MEX][hapmap]
rs220890	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs220891	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs220894	0.82[EUR][1000 genomes]
rs220895	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[ASN][1000 genomes]
rs220896	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs220897	0.82[ASN][1000 genomes]
rs220898	0.89[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.84[ASN][1000 genomes]
rs220899	0.89[CEU][hapmap];0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs220900	0.89[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs220901	0.82[EUR][1000 genomes]
rs220903	0.82[ASN][1000 genomes]
rs220904	0.84[ASN][1000 genomes]
rs220905	0.84[ASN][1000 genomes]
rs220907	0.84[ASN][1000 genomes]
rs220908	0.82[EUR][1000 genomes]
rs220911	0.84[ASN][1000 genomes]
rs220913	0.82[ASN][1000 genomes]
rs220914	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220917	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220918	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220919	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220920	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs374814	0.92[EUR][1000 genomes]
rs387725	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs387816	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs389746	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs398785	0.88[CEU][hapmap]
rs413080	0.89[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes]
rs420350	0.89[CEU][hapmap]
rs426166	0.82[EUR][1000 genomes]
rs552546	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs6908590	0.97[EUR][1000 genomes]
rs6922522	0.86[CHB][hapmap]
rs74111	1.00[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs7774855	0.86[CHB][hapmap]
rs9349986	0.86[CHB][hapmap]
rs9464829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476913	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs9476930	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9476931	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476932	1.00[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs9476935	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476936	0.91[EUR][1000 genomes]
rs9476941	0.82[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15791000-15796400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr6:15791000-15798000	Enhancers	Fetal Muscle Leg	muscle
3	chr6:15791600-15796400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:15792000-15795400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:15792000-15795400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:15792200-15796400	Weak transcription	Placenta	Placenta
7	chr6:15792800-15794800	Enhancers	Left Ventricle	heart
8	chr6:15793200-15795200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:15793200-15797600	Enhancers	Fetal Heart	heart
10	chr6:15793400-15796600	Weak transcription	Aorta	Aorta
11	chr6:15793600-15795800	Enhancers	K562	blood
12	chr6:15793800-15796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:15794400-15794800	Enhancers	Fetal Lung	lung
14	chr6:15794400-15796400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:15794400-15796800	Weak transcription	HMEC	breast
16	chr6:15794600-15795000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:15794600-15795400	Weak transcription	HSMMtube	muscle
18	chr6:15794600-15796000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links