Variant report

Variant	rs220903
Chromosome Location	chr6:15774952-15774953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1109287	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13202323	0.85[EUR][1000 genomes]
rs183397	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1927576	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927577	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1927579	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2002086	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2007855	0.82[EUR][1000 genomes]
rs2093622	0.81[AMR][1000 genomes]
rs2146594	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2181434	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs220890	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs220891	0.87[EUR][1000 genomes]
rs220894	0.87[EUR][1000 genomes]
rs220895	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220896	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs220897	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs220898	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220899	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220900	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220901	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs220904	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220905	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220907	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220908	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs220911	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220913	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220914	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs220917	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220918	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220919	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220920	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs398785	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs413080	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs420350	0.90[EUR][1000 genomes]
rs4715997	0.85[AFR][1000 genomes]
rs6911160	0.87[AFR][1000 genomes]
rs6922522	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6925310	0.82[ASN][1000 genomes]
rs6925866	0.88[AFR][1000 genomes]
rs7739977	0.86[AFR][1000 genomes]
rs7758099	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7774855	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9349986	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9464822	0.89[ASN][1000 genomes]
rs9464829	0.82[ASN][1000 genomes]
rs9476913	0.87[EUR][1000 genomes]
rs9476920	0.82[AFR][1000 genomes]
rs9476922	0.81[AFR][1000 genomes]
rs9476931	0.82[ASN][1000 genomes]
rs9476935	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15771200-15778000	Weak transcription	Gastric	stomach
3	chr6:15771800-15775400	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links