Variant report

Variant	rs7758099
Chromosome Location	chr6:15759135-15759136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15757989..15759932-chr6:16129281..16131429,2	K562	blood:
2	chr6:15757449..15762937-chr6:16128503..16130912,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1109287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970558	0.84[EUR][1000 genomes]
rs183397	0.86[ASN][1000 genomes]
rs1927576	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927577	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927579	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2002086	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093622	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2146594	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181434	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220895	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220897	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220898	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220899	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220900	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs220903	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs220904	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220905	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220907	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs220911	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220913	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220914	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs220917	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs220918	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs220919	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs220920	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs413080	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56106152	0.83[EUR][1000 genomes]
rs6914413	0.85[EUR][1000 genomes]
rs6922522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774855	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464822	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476903	0.84[EUR][1000 genomes]
rs9476908	0.84[EUR][1000 genomes]
rs9476935	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15755400-15760000	Weak transcription	Pancreas	Pancrea
2	chr6:15756200-15763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:15758800-15759200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:15758800-15759400	Weak transcription	Esophagus	oesophagus
5	chr6:15759000-15759600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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