Variant report

Variant	rs220905
Chromosome Location	chr6:15775454-15775455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15775372..15777513-chr6:16102594..16104875,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10949314	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs1109287	0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13202323	0.90[EUR][1000 genomes]
rs183397	0.88[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs191986	0.89[CEU][hapmap]
rs1927575	0.87[AFR][1000 genomes]
rs1927576	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1927577	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1927579	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2002086	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2007855	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2093622	0.81[AMR][1000 genomes]
rs2146594	0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2149146	0.85[AFR][1000 genomes]
rs2181434	0.82[CHD][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs220890	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220891	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220894	0.93[EUR][1000 genomes]
rs220895	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220896	0.87[ASW][hapmap];1.00[CEU][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs220897	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220898	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220901	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220903	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs220907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220908	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs220914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220920	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs387725	0.80[ASN][1000 genomes]
rs387816	0.93[CHB][hapmap]
rs398785	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs413080	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420350	1.00[CEU][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs4712256	0.81[AFR][1000 genomes]
rs4715997	0.92[AFR][1000 genomes]
rs552546	0.93[CHB][hapmap]
rs6911160	0.90[AFR][1000 genomes]
rs6922522	0.93[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925310	0.89[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.84[ASN][1000 genomes]
rs6925866	0.92[AFR][1000 genomes]
rs74111	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7739472	0.87[AFR][1000 genomes]
rs7739977	0.94[AFR][1000 genomes]
rs7758099	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7774855	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9349986	0.93[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464822	0.91[ASN][1000 genomes]
rs9464829	0.89[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.96[MEX][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9476913	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476920	0.89[AFR][1000 genomes]
rs9476922	0.89[AFR][1000 genomes]
rs9476930	0.89[CEU][hapmap]
rs9476931	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9476932	0.89[CEU][hapmap]
rs9476935	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
2	chr6:15771200-15778000	Weak transcription	Gastric	stomach
3	chr6:15775400-15777000	Enhancers	GM12878-XiMat	blood

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